From: amwaterhouse <Andrew Waterhouse>
Date: Mon, 21 Mar 2005 18:48:58 +0000 (+0000)
Subject: identifies more varied blc files
X-Git-Tag: Release_2_0~530
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=198a43209e4ed9b8b51b7818ca323748bf4c24b3;p=jalview.git

identifies more varied blc files
---

diff --git a/src/jalview/io/IdentifyFile.java b/src/jalview/io/IdentifyFile.java
index 2baf323..c457b58 100755
--- a/src/jalview/io/IdentifyFile.java
+++ b/src/jalview/io/IdentifyFile.java
@@ -15,7 +15,7 @@ public class IdentifyFile
 {
   public static String Identify(String file, String protocol)
   {
-    String reply = "error";
+    String reply = "PFAM";
     try{
 
       BufferedReader reader = null;
@@ -56,23 +56,17 @@ public class IdentifyFile
           reply = "PIR";
           break;
         }
-        else if(data.indexOf(">")==0)
+        else if(data.indexOf(">")>-1)
         {
           // could be BLC file
           data = reader.readLine();
-          if(data.indexOf(">")==0)
+          if(data.indexOf(">")>-1)
             reply = "BLC";
           else
             reply = "FASTA";
 
             break;
         }
-        else
-        {
-           reply = "PFAM";
-           break;
-         }
-
       }
       reader.close();
     }