From: cmzmasek@gmail.com <cmzmasek@gmail.com@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Thu, 21 Mar 2013 00:05:38 +0000 (+0000)
Subject: inprogress
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=198b99bb89e3470443b43ca8d2729d06e50717a5;p=jalview.git

inprogress
---

diff --git a/forester/ruby/evoruby/lib/evo/tool/taxonomy_processor.rb b/forester/ruby/evoruby/lib/evo/tool/taxonomy_processor.rb
index 1fc8e95..baaec66 100644
--- a/forester/ruby/evoruby/lib/evo/tool/taxonomy_processor.rb
+++ b/forester/ruby/evoruby/lib/evo/tool/taxonomy_processor.rb
@@ -170,8 +170,6 @@ module Evoruby
 
     def modify_name( desc, counter, file, extract_taxonomy )
       new_desc = nil
-      desc.gsub!( /:\s+/, ":" )
-      desc.gsub!( /\s+/, " " )
       if desc =~ /^>?\s*\S{1,10}_([A-Z]{3,5})/
         new_desc = counter.to_s( 16 ) + "_" + $1
       elsif extract_taxonomy