From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 7 Apr 2005 15:16:24 +0000 (+0000)
Subject: no longer used
X-Git-Tag: Release_2_0~469
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=19ff40f61a07b2663601bd594f77e524a525edd5;p=jalview.git

no longer used
---

diff --git a/src/jalview/gui/GroupEditor.java b/src/jalview/gui/GroupEditor.java
deleted file mode 100755
index e3c49d6..0000000
--- a/src/jalview/gui/GroupEditor.java
+++ /dev/null
@@ -1,329 +0,0 @@
-package jalview.gui;
-
-import jalview.jbgui.GGroupEditor;
-import jalview.datamodel.*;
-import jalview.schemes.*;
-import java.awt.event.*;
-import java.util.*;
-import javax.swing.*;
-
-
-public class GroupEditor extends GGroupEditor
-{
-  AlignViewport av;
-  AlignmentPanel ap;
-  Vector groups;
-  Vector unassignedVector;
-  Vector assignedVector=new Vector();
-  boolean updating=false;
-  int selectedGroupIndex = 0;
-  Hashtable sequenceHash = new Hashtable();
-
-  public GroupEditor(AlignViewport av, AlignmentPanel ap)
-  {
-    this.av = av;
-    this.ap = ap;
-    groups = av.getAlignment().getGroups();
-
-    updateUnassigned();
-    for (int i=0; i < ColourProperties.getColourSchemeNames().size(); i++)
-       colourCombo.addItem(ColourProperties.getColourSchemeNames().elementAt(i));
-
-     if(groups.size()>0)
-     {
-       showGroup();
-       updateGroupcombo();
-     }
-
-    assignedList.addMouseListener( new MouseAdapter()
-    {
-      public void mouseClicked(MouseEvent e)
-      {
-        if (e.getClickCount() == 2)
-        {    remove_actionPerformed(null);      }
-      }
-    });
-
-    unassignedList.addMouseListener( new MouseAdapter()
-    {
-      public void mouseClicked(MouseEvent e)
-      {
-        if (e.getClickCount() == 2)
-        { add_actionPerformed(null);    }
-      }
-    });
-  }
-
-
-  void updateGui()
-  {
-    unassignedList.setListData(unassignedVector);
-    assignedList.setListData(assignedVector);
-    updateGroupcombo();
-    ap.RefreshPanels();
-  }
-
-
-  void updateGroupcombo()
-  {
-    updating=true;
-
-    if(groupsCombo.getItemCount()>0)
-      groupsCombo.removeAllItems();
-
-    for (int i = 0; i < groups.size(); i++) {
-      SequenceGroup sg = (SequenceGroup)groups.elementAt(i);
-      groupsCombo.addItem( sg.getName() + " (" + sg.getSize() + " sequences)");
-    }
-    groupsCombo.setSelectedIndex(selectedGroupIndex);
-    updating=false;
-  }
-
-  void updateUnassigned()
-  {
-    unassignedVector=new Vector();
-    AlignmentI align = av.getAlignment();
-
-    for (int i = 0; i < align.getHeight();i++)
-    {
-      sequenceHash.put( align.getSequenceAt(i).getDisplayId(), align.getSequenceAt(i) );
-      boolean assigned = false;
-      for(int j=0; j<groups.size(); j++)
-      {
-        SequenceGroup sg = (SequenceGroup)groups.elementAt(j);
-        for(int k=0; k<sg.getSize(); k++)
-        {
-          if(sg.getSequenceAt(k).getDisplayId().equals( align.getSequenceAt(i).getDisplayId() ) )
-          {
-            assigned = true; break;
-          }
-        }
-
-        if(assigned)
-          break;
-      }
-
-      if(!assigned)
-          unassignedVector.add(align.getSequenceAt(i).getDisplayId());
-
-    }
-
-    unassignedList.setListData(unassignedVector);
-  }
-
-
-  void showGroup()
-  {
-    if(groups.size()<1)
-       return;
-
-    assignedVector = new Vector();
-    if(selectedGroupIndex!=-1)
-    {
-      SequenceGroup sg = (SequenceGroup) groups.elementAt(selectedGroupIndex);
-      for (int j = 0; j < sg.getSize(); j++)
-      {
-        Sequence s = (Sequence) sg.getSequenceAt(j);
-        assignedVector.addElement(s.getDisplayId());
-      }
-      int num = ColourProperties.indexOfClass(sg.cs);
-      colourCombo.setSelectedIndex(num);
-
-      boxesCheck.setSelected(sg.getDisplayBoxes());
-      textCheck.setSelected(sg.getDisplayText());
-      colourTextCheck.setSelected(sg.getColourText());
-    }
-
-
-    assignedList.setListData( assignedVector );
-  }
-
-
-  protected void groupsCombo_actionPerformed(ActionEvent e)
-  {
-    if( !updating )
-    {
-      selectedGroupIndex = groupsCombo.getSelectedIndex();
-      showGroup();
-    }
-  }
-
-  protected void groupName_actionPerformed(ActionEvent e)
-  {
-    String reply = JOptionPane.showInternalInputDialog(this, "Enter new group name", "Edit group name", JOptionPane.QUESTION_MESSAGE);
-    if(reply==null)
-      return;
-
-    SequenceGroup sg = (SequenceGroup)groups.elementAt(selectedGroupIndex);
-    sg.setName(reply);
-    updateGroupcombo();
-  }
-
-  protected void colourCombo_actionPerformed(ActionEvent e)
-  {
-     if(groups.size()<1)
-       return;
-
-     SequenceGroup sg = (SequenceGroup)groups.elementAt(selectedGroupIndex);
-
-     sg.cs = ColourSchemeFactory.get( (String)colourCombo.getSelectedItem() );
-     //ColourProperties.getColourScheme( colourCombo.getSelectedIndex() );
-     ap.RefreshPanels();
-  }
-
-  protected void boxesCheck_actionPerformed(ActionEvent e)
-  {
-    SequenceGroup sg = (SequenceGroup)groups.elementAt(selectedGroupIndex);
-    sg.setDisplayBoxes( boxesCheck.isSelected());
-        ap.RefreshPanels();
-  }
-
-  protected void textCheck_actionPerformed(ActionEvent e)
-  {
-    SequenceGroup sg = (SequenceGroup)groups.elementAt(selectedGroupIndex);
-    sg.setDisplayText( textCheck.isSelected() );
-        ap.RefreshPanels();
-  }
-
-  protected void colourTextCheck_actionPerformed(ActionEvent e)
-  {
-    SequenceGroup sg = (SequenceGroup)groups.elementAt(selectedGroupIndex);
-    sg.setColourText( colourTextCheck.isSelected());
-        ap.RefreshPanels();
-  }
-
-  protected void addSelectedIds_actionPerformed(ActionEvent e)
-  {
-    if(selectedGroupIndex==-1)
-      return;
-
-    SequenceGroup sg = (SequenceGroup)groups.elementAt(selectedGroupIndex);
-
-    for(int i=0; i<av.getSelectionGroup().getSize(); i++)
-    {
-      int index = unassignedVector.indexOf( av.getSelectionGroup().getSequenceAt(i).getDisplayId() );
-      if(index!=-1)
-      {
-        sg.addSequence( (SequenceI) sequenceHash.get( unassignedVector.elementAt(index) ));
-        assignedVector.addElement( unassignedVector.elementAt(index));
-        unassignedVector.removeElementAt( index );
-      }
-
-    }
-    updateGui();
-  }
-
-  protected void add_actionPerformed(ActionEvent e)
-  {
-    if(selectedGroupIndex==-1)
-      return;
-
-    int [] indices  = unassignedList.getSelectedIndices();
-    if(indices.length<1)
-      return;
-
-    SequenceGroup sg = (SequenceGroup)groups.elementAt(selectedGroupIndex);
-
-    for(int i=0; i<indices.length; i++)
-    {
-      assignedVector.addElement(unassignedVector.elementAt(indices[i]-i));
-      sg.addSequence( (SequenceI)sequenceHash.get( unassignedVector.elementAt(indices[i]-i) ));
-      unassignedVector.removeElementAt(indices[i]-i);
-    }
-    updateGui();
-  }
-
-  protected void addAll_actionPerformed(ActionEvent e)
-  {
-    if(selectedGroupIndex==-1)
-      return;
-
-    SequenceGroup sg = (SequenceGroup)groups.elementAt(selectedGroupIndex);
-    Enumeration enum = unassignedVector.elements();
-    while(enum.hasMoreElements())
-    {
-      String id = (String)enum.nextElement();
-      assignedVector.addElement( id );
-      sg.addSequence( (SequenceI)sequenceHash.get( id ));
-    }
-
-    unassignedVector.clear();
-    updateGui();
-  }
-
-  protected void remove_actionPerformed(ActionEvent e)
-  {
-    if(selectedGroupIndex==-1)
-      return;
-
-    SequenceGroup sg = (SequenceGroup)groups.elementAt(selectedGroupIndex);
-
-    int [] indices = assignedList.getSelectedIndices();
-    if(indices.length<1)
-      return;
-
-    for(int i=0; i<indices.length; i++)
-    {
-
-      unassignedVector.addElement(assignedVector.elementAt(indices[i]-i));
-      SequenceI removeSequence = (SequenceI)sequenceHash.get( assignedVector.elementAt(indices[i]-i) );
-      av.getSelectionGroup().deleteSequence( removeSequence );
-      sg.deleteSequence( removeSequence );
-      assignedVector.removeElementAt(indices[i]-i);
-
-    }
-
-    updateGui();
-  }
-
-  protected void removeAll_actionPerformed(ActionEvent e)
-  {
-    if(selectedGroupIndex==-1)
-      return;
-
-    SequenceGroup sg = (SequenceGroup)groups.elementAt(selectedGroupIndex);
-    Enumeration enum = assignedVector.elements();
-    while(enum.hasMoreElements())
-    {
-      String id = (String)enum.nextElement();
-      unassignedVector.addElement( id );
-      SequenceI removeSequence = (SequenceI)sequenceHash.get( id );
-      av.getSelectionGroup().deleteSequence( removeSequence );
-      sg.deleteSequence( removeSequence );
-    }
-
-    assignedVector.clear();
-    updateGui();
-  }
-
-  protected void addGroup_actionPerformed(ActionEvent e)
-  {
-
-   ColourSchemeI cs = ColourSchemeFactory.get( (String)colourCombo.getSelectedItem() );
-    //   ColourProperties.getColourScheme( colourCombo.getSelectedIndex() );
-
-   groups.add(
-      new SequenceGroup("Group "+(groups.size()+1),
-                        cs,
-                        boxesCheck.isSelected(),
-                        textCheck.isSelected(),
-                        colourTextCheck.isSelected(),
-                        0, av.alignment.getWidth()
-                        ) );
-
-   updateGroupcombo();
-   groupsCombo.setSelectedIndex( groupsCombo.getItemCount()-1 );
-   showGroup();
-  }
-
-  protected void deleteGroup_actionPerformed(ActionEvent e)
-  {
-    removeAll_actionPerformed(null);
-    groups.remove( selectedGroupIndex );
-    selectedGroupIndex=-1;
-    updateGroupcombo();
-    groupsCombo.setSelectedIndex( groupsCombo.getItemCount()-1 );
-    showGroup();
-  }
-
-}
diff --git a/src/jalview/jbgui/GGroupEditor.java b/src/jalview/jbgui/GGroupEditor.java
deleted file mode 100755
index d99c31d..0000000
--- a/src/jalview/jbgui/GGroupEditor.java
+++ /dev/null
@@ -1,274 +0,0 @@
-package jalview.jbgui;
-
-import java.awt.*;
-import javax.swing.*;
-import java.awt.event.*;
-import javax.swing.border.*;
-
-public class GGroupEditor extends JPanel
-{
-  protected JList assignedList = new JList();
-  protected JComboBox groupsCombo = new JComboBox();
-  protected JList unassignedList = new JList();
-  JButton add = new JButton();
-  JButton addAll = new JButton();
-  JButton remove = new JButton();
-  JButton removeAll = new JButton();
-  JPanel jPanel1 = new JPanel();
-  GridLayout gridLayout1 = new GridLayout();
-  TitledBorder titledBorder1;
-  TitledBorder titledBorder2;
-  JPanel jPanel2 = new JPanel();
-  BorderLayout borderLayout1 = new BorderLayout();
-  JButton addGroup = new JButton();
-  JButton deleteGroup = new JButton();
-  JButton addSelectedIds = new JButton();
-  protected JCheckBox textCheck = new JCheckBox();
-  protected JCheckBox colourTextCheck = new JCheckBox();
-  protected JCheckBox boxesCheck = new JCheckBox();
-  protected JComboBox colourCombo = new JComboBox();
-  JPanel jPanel3 = new JPanel();
-  GridLayout gridLayout2 = new GridLayout();
-  JScrollPane jScrollPane1 = new JScrollPane();
-  JScrollPane jScrollPane2 = new JScrollPane();
-  JButton groupName = new JButton();
-
-  public GGroupEditor()
-  {
-    try
-    {
-      jbInit();
-    }
-    catch(Exception e)
-    {
-      e.printStackTrace();
-    }
-  }
-  private void jbInit() throws Exception
-  {
-    titledBorder1 = new TitledBorder("Unassigned Sequences");
-    titledBorder2 = new TitledBorder("Current Groups");
-    this.setLayout(null);
-    unassignedList.setFont(new java.awt.Font("Verdana", 0, 10));
-    unassignedList.setBorder(titledBorder1);
-    add.setFont(new java.awt.Font("Verdana", 0, 10));
-    add.setText("Add to group");
-    add.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        add_actionPerformed(e);
-      }
-    });
-    addAll.setFont(new java.awt.Font("Verdana", 0, 10));
-    addAll.setText("Add all to group");
-    addAll.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        addAll_actionPerformed(e);
-      }
-    });
-    remove.setFont(new java.awt.Font("Verdana", 0, 10));
-    remove.setText("Remove from group");
-    remove.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        remove_actionPerformed(e);
-      }
-    });
-    removeAll.setFont(new java.awt.Font("Verdana", 0, 10));
-    removeAll.setMargin(new Insets(0, 0, 0, 0));
-    removeAll.setText("Remove all from group");
-    removeAll.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        removeAll_actionPerformed(e);
-      }
-    });
-    jPanel1.setBounds(new Rectangle(265, 82, 169, 108));
-    jPanel1.setLayout(gridLayout1);
-    gridLayout1.setRows(4);
-    jPanel2.setFont(new java.awt.Font("Verdana", 0, 10));
-    jPanel2.setBorder(titledBorder2);
-    jPanel2.setBounds(new Rectangle(4, 3, 257, 369));
-    jPanel2.setLayout(borderLayout1);
-    addGroup.setBounds(new Rectangle(265, 259, 166, 25));
-    addGroup.setFont(new java.awt.Font("Verdana", 0, 10));
-    addGroup.setText("Add new group");
-    addGroup.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        addGroup_actionPerformed(e);
-      }
-    });
-    deleteGroup.setBounds(new Rectangle(266, 285, 163, 25));
-    deleteGroup.setFont(new java.awt.Font("Verdana", 0, 10));
-    deleteGroup.setText("Delete selected group");
-    deleteGroup.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        deleteGroup_actionPerformed(e);
-      }
-    });
-    addSelectedIds.setBounds(new Rectangle(268, 37, 160, 25));
-    addSelectedIds.setFont(new java.awt.Font("Verdana", 0, 10));
-    addSelectedIds.setText("Add selected ids");
-    addSelectedIds.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        addSelectedIds_actionPerformed(e);
-      }
-    });
-    textCheck.setFont(new java.awt.Font("Verdana", 0, 10));
-    textCheck.setText("Display text");
-    textCheck.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        textCheck_actionPerformed(e);
-      }
-    });
-    colourTextCheck.setFont(new java.awt.Font("Verdana", 0, 10));
-    colourTextCheck.setText("Colour text");
-    colourTextCheck.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        colourTextCheck_actionPerformed(e);
-      }
-    });
-    boxesCheck.setFont(new java.awt.Font("Verdana", 0, 10));
-    boxesCheck.setText("Display boxes");
-    boxesCheck.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        boxesCheck_actionPerformed(e);
-      }
-    });
-    jPanel3.setLayout(gridLayout2);
-    gridLayout2.setRows(4);
-    colourCombo.setFont(new java.awt.Font("Verdana", 0, 10));
-    colourCombo.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        colourCombo_actionPerformed(e);
-      }
-    });
-    assignedList.setFont(new java.awt.Font("Verdana", 0, 10));
-    groupsCombo.setFont(new java.awt.Font("Verdana", 0, 10));
-    groupsCombo.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        groupsCombo_actionPerformed(e);
-      }
-    });
-    this.setBackground(Color.lightGray);
-    jScrollPane1.setBounds(new Rectangle(437, 6, 257, 367));
-    groupName.setBounds(new Rectangle(266, 232, 166, 25));
-    groupName.setFont(new java.awt.Font("Verdana", 0, 10));
-    groupName.setVerifyInputWhenFocusTarget(true);
-    groupName.setText("Edit group name");
-    groupName.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        groupName_actionPerformed(e);
-      }
-    });
-    jPanel1.add(add, null);
-    jPanel1.add(addAll, null);
-    jPanel1.add(remove, null);
-    jPanel1.add(removeAll, null);
-    this.add(addSelectedIds, null);
-    this.add(jPanel1, null);
-    this.add(jPanel2, null);
-    jPanel3.add(colourCombo, null);
-    jPanel3.add(boxesCheck, null);
-    jPanel3.add(textCheck, null);
-    jPanel3.add(colourTextCheck, null);
-    this.add(jScrollPane1, null);
-    this.add(addGroup, null);
-    this.add(deleteGroup, null);
-    this.add(groupName, null);
-    jScrollPane1.getViewport().add(unassignedList, null);
-    jPanel2.add(jScrollPane2, BorderLayout.CENTER);
-    jPanel2.add(groupsCombo, BorderLayout.NORTH);
-    jPanel2.add(jPanel3, BorderLayout.SOUTH);
-    jScrollPane2.getViewport().add(assignedList, null);
-  }
-
-  protected void add_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  protected void groupsCombo_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  protected void colourCombo_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  protected void boxesCheck_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  protected void textCheck_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  protected void colourTextCheck_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  protected void addSelectedIds_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  protected void addAll_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  protected void remove_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  protected void removeAll_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  protected void addGroup_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  protected void deleteGroup_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-
-  protected void groupName_actionPerformed(ActionEvent e)
-  {
-
-  }
-}