From: cmzmasek <cmzmasek@ca865154-3058-d1c3-3e42-d8f55a55bdbd>
Date: Tue, 4 Sep 2012 05:23:49 +0000 (+0000)
Subject: getting of external node data
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=1a9e4edf701d2cbef55dcc25f49ef57c71dc08f1;p=jalview.git

getting of external node data
---

diff --git a/forester/aptx/aptx_configuration_files/_aptx_configuration_file b/forester/aptx/aptx_configuration_files/_aptx_configuration_file
index bf0577a..b858bf0 100644
--- a/forester/aptx/aptx_configuration_files/_aptx_configuration_file
+++ b/forester/aptx/aptx_configuration_files/_aptx_configuration_file
@@ -69,6 +69,13 @@ native_ui: ?
 #     Possible values: solid
 #                      gradient
 #                      none
+#  To determine what data field to return by clicking on "return external descendents data":
+#     'ext_descendents_data_to_return'
+#     Possible values: node_name
+#                      sequence_name
+#                      sequence_acc
+#                      sequence_mol_seq
+#                      sequence_symbol
 #  Taxonomy colorization of nodes (shapes) instead of labels: 'taxonomy_colorize_node_shapes': values: 'yes'/'no'
 #  Do/not color labels same as branch length values: 'color_labels_same_as_branch_length_values': values: 'yes'/'no'
 #  Do/not show domain labels: 'show_domain_labels': values: 'yes'/'no'
@@ -86,6 +93,7 @@ native_ui: ?
 #     'internal_labels_are_confidence_values'
 
 
+
 min_confidence_value:                      0.0
 font_family:                               Verdana,Tahoma,Arial,Helvetica,Dialog,Lucida-Sans,SansSerif,Sans-serif,Sans
 font_size:                                 10
@@ -118,7 +126,7 @@ allow_editing:                             yes
 internal_labels_are_confidence_values:     no
 replace_underscores_in_nh_parsing:         no
 extract_taxonomy_codes_in_nh_parsing:      yes
-
+ext_descendents_data_to_return:            sequence_mol_seq
 
 
 #  phyloXML parsing