From: cmzmasek Date: Thu, 27 Sep 2012 05:23:59 +0000 (+0000) Subject: in progress X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=1b8b45757705b933cdc708b59a26827c36efd6fd;p=jalview.git in progress --- diff --git a/forester/java/src/org/forester/archaeopteryx/Configuration.java b/forester/java/src/org/forester/archaeopteryx/Configuration.java index 4e445bc..d495fc4 100644 --- a/forester/java/src/org/forester/archaeopteryx/Configuration.java +++ b/forester/java/src/org/forester/archaeopteryx/Configuration.java @@ -211,6 +211,7 @@ public final class Configuration { private Color _domain_structure_font_color = Constants.DOMAIN_STRUCTURE_FONT_COLOR_DEFAULT; private Color _domain_structure_base_color = Constants.DOMAIN_STRUCTURE_BASE_COLOR_DEFAULT; private NODE_DATA _ext_desc_data_to_return; + private static String DEFAULT_FONT_FAMILY = ""; static { for( final String font_name : Constants.DEFAULT_FONT_CHOICES ) { @@ -1309,9 +1310,7 @@ public final class Configuration { + "] for [ext_descendents_data_to_return]" ); } } - else if ( key.equals( "label_for_get_ext_descendents_data" ) ) { - set( ( String ) st.nextElement() ).replaceAll( "_", " " ); - } + else if ( st.countTokens() >= 2 ) { // counts the tokens that are not // yet retrieved! int key_index = -1; @@ -1509,6 +1508,8 @@ public final class Configuration { } } + + public void setMinConfidenceValue( final double min_confidence_value ) { _min_confidence_value = min_confidence_value; }