From: jprocter Date: Tue, 8 May 2007 16:49:47 +0000 (+0000) Subject: sort by score X-Git-Tag: Release_2_3~29 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=1bd5b4d3aba2805e8c6b9ad5054ce317c6aa1d31;p=jalview.git sort by score --- diff --git a/help/html/calculations/sorting.html b/help/html/calculations/sorting.html index 47522ee..1c15890 100755 --- a/help/html/calculations/sorting.html +++ b/help/html/calculations/sorting.html @@ -34,8 +34,13 @@ alignments by some measure of sequence identity.
If the current alignment has been generated by one of Jalview's alignment web services, the alignment ordering can be recovered by its corresponding entry in the Sort menu. -

+

+
  • Sort by Score

    +

    This menu appears if the alignment contains any sequence associated +alignment annotation with associated score values. Each entry is the +label for a distinct group of sequence associated annotation +scores which can be used for sorting.

    Reversing the Order

    Selecting any item from the Sort menu will sort sequences in an diff --git a/help/html/menus/alwcalculate.html b/help/html/menus/alwcalculate.html index 9d40868..6ee7ed8 100755 --- a/help/html/menus/alwcalculate.html +++ b/help/html/menus/alwcalculate.html @@ -18,7 +18,8 @@ identity to the consensus sequence. The most similar sequence is put at the top.

  • The Sort menu will have - some additional options if you have just done a multiple alignment calculation, + some additional options if the alignment has any associated + score annotation, or you have just done a multiple alignment calculation or opened a tree viewer window.