From: pvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d>
Date: Tue, 21 Jun 2011 11:34:53 +0000 (+0000)
Subject: Changes to accomodate new version's of mafft packaging
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=1e29b6fbcedf82cadc24953888a86451b2b86452;p=jabaws.git

Changes to accomodate new version's of mafft packaging

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4292 e3abac25-378b-4346-85de-24260fe3988d
---

diff --git a/binaries/src/compilebin.sh b/binaries/src/compilebin.sh
index 405921e..c530cca 100644
--- a/binaries/src/compilebin.sh
+++ b/binaries/src/compilebin.sh
@@ -14,12 +14,7 @@ echo "Compiling Mafft..."
 cd mafft/core
 make clean
 make
-chmod +x mafft 
 cd ../..
-cd mafft/binaries
-chmod +x *
-cd ../..
-
 
 echo "Compiling Mafft dependency fasta34..."
 cd fasta34
diff --git a/binaries/src/setexecflag.sh b/binaries/src/setexecflag.sh
index 48f0431..898ffa4 100644
--- a/binaries/src/setexecflag.sh
+++ b/binaries/src/setexecflag.sh
@@ -6,6 +6,7 @@ chmod +x clustalw/src/clustalw2
 
 echo "Setting executable flag for Mafft..."
 chmod +x mafft/binaries/* 
+chmod +x mafft/scripts/*
 
 echo "Setting executable flag for Mafft dependency fasta34 ..."
 chmod +x fasta34/fasta34