From: jprocter <Jim Procter>
Date: Fri, 7 Jan 2011 13:10:41 +0000 (+0000)
Subject: refactored to use SequenceI
X-Git-Tag: Release_2_7~319
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=1e3134c678feabd5e1259b5b931be70b0ef73590;p=jalview.git

refactored to use SequenceI
---

diff --git a/src/jalview/analysis/SequenceIdMatcher.java b/src/jalview/analysis/SequenceIdMatcher.java
index 0046cf5..f878a09 100755
--- a/src/jalview/analysis/SequenceIdMatcher.java
+++ b/src/jalview/analysis/SequenceIdMatcher.java
@@ -117,13 +117,13 @@ public class SequenceIdMatcher
    *          SequenceI
    * @return SequenceI
    */
-  SequenceI findIdMatch(SequenceI seq)
+  public SequenceI findIdMatch(SequenceI seq)
   {
     SeqIdName nam = new SeqIdName(seq.getName());
     return findIdMatch(nam);
   }
 
-  SequenceI findIdMatch(String seqnam)
+  public SequenceI findIdMatch(String seqnam)
   {
     SeqIdName nam = new SeqIdName(seqnam);
     return findIdMatch(nam);
@@ -139,7 +139,7 @@ public class SequenceIdMatcher
    *          SequenceI[]
    * @return SequenceI[]
    */
-  SequenceI[] findIdMatch(SequenceI[] seqs)
+  public SequenceI[] findIdMatch(SequenceI[] seqs)
   {
     SequenceI[] namedseqs = null;
     int i = 0;