From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Thu, 18 Feb 2010 15:37:57 +0000 (+0000)
Subject: verson 0.2 LGPL licensed source and jars
X-Git-Tag: Release_0.2~7
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=1eea4b639911330e7cd65e17c5421cc584f0d22e;p=vamsas.git

verson 0.2 LGPL licensed source and jars

git-svn-id: https://svn.lifesci.dundee.ac.uk/svn/repository/trunk@514 be28352e-c001-0410-b1a7-c7978e42abec
---

diff --git a/README b/README
index 1d2a32c..0c12439 100644
--- a/README
+++ b/README
@@ -1,8 +1,8 @@
 The VAMSAS Client
 =================
 
-This is an LGPLed Java implementation of the VAMSAS framework for 
-bioinformatics application data exchange interoperation. 
+This is version 0.2 of the LGPLed Java implementation of the 
+VAMSAS framework for bioinformatics application data exchange interoperation. 
 VAMSAS is a pseudo-acronym, and is short for 'Visualization and Analysis 
 of Molecular Sequences, Alignments and Structures'. 
 The client is the product of an eScience research project funded by the
@@ -36,8 +36,22 @@ to be used, but it does not yet demonstrate all aspects of the interchange model
 For more information, please contact me, or any of the other developers 
 directly, or via their program's own email discussion list.
 
+Changes since version 0.1
+-------------------------
+* Session Name parameter to decouple vamsas document source from session URN
+* VAMSAS data selection event 
+* 1.5 and 1.4 build options
+* SAXTreeViewer
+* minor bug and information message fixes.
+
+The SAXTreeViewer was added to the uk.ac.vamsas.test.document package - it is
+a simple debug tool which will monitor a specific VAMSAS document archive, and
+display its contents as a tree which is updated after any modifications by other
+VAMSAS clients.  This class relies on the java 1.5 runtime, so a build1.4 
+
+
 Jim Procter.
-7th May 2009.
+18th February 2010.
 
 The other VAMSAS coders: Dominik Lindner, Pierre Marguerite, Iain Milne, Andrew Waterhouse.
 The VAMSAS project researchers: Geoff Barton, David Martin, David Marshall, Tom Oldfield, Frank Wright.
diff --git a/build.xml b/build.xml
index 54cb360..b3d0a83 100644
--- a/build.xml
+++ b/build.xml
@@ -1,25 +1,25 @@
 <?xml version="1.0"?>
 <!--
-  This file is part of the Vamsas Client version 0.1. 
-  Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
-   Andrew Waterhouse and Dominik Lindner.
-  
-  Earlier versions have also been incorporated into Jalview version 2.4 
-  since 2008, and TOPALi version 2 since 2007.
-  
-  The Vamsas Client is free software: you can redistribute it and/or modify
-  it under the terms of the GNU Lesser General Public License as published by
-  the Free Software Foundation, either version 3 of the License, or
-  (at your option) any later version.
-   
-  The Vamsas Client is distributed in the hope that it will be useful,
-  but WITHOUT ANY WARRANTY; without even the implied warranty of
-  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-  GNU Lesser General Public License for more details.
-  
-  You should have received a copy of the GNU Lesser General Public License
-  along with the Vamsas Client.  If not, see <http://www.gnu.org/licenses/>.
- -->
+   * This file is part of the Vamsas Client version 0.2. 
+   * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
+   *  Andrew Waterhouse and Dominik Lindner.
+   * 
+   * Earlier versions have also been incorporated into Jalview version 2.4 
+   * since 2008, and TOPALi version 2 since 2007.
+   * 
+   * The Vamsas Client is free software: you can redistribute it and/or modify
+   * it under the terms of the GNU Lesser General Public License as published by
+   * the Free Software Foundation, either version 3 of the License, or
+   * (at your option) any later version.
+   *  
+   * The Vamsas Client is distributed in the hope that it will be useful,
+   * but WITHOUT ANY WARRANTY; without even the implied warranty of
+   * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+   * GNU Lesser General Public License for more details.
+   * 
+   * You should have received a copy of the GNU Lesser General Public License
+   * along with the Vamsas Client.  If not, see <http://www.gnu.org/licenses/>.
+-->
 <project name="vamsas-client" default="build" basedir=".">
 
 	<target name="init">
diff --git a/packages/vamsas-client.jar b/packages/vamsas-client.jar
index ea39a62..eee7df1 100644
Binary files a/packages/vamsas-client.jar and b/packages/vamsas-client.jar differ
diff --git a/packages/vamsas-schema-and-doc.jar b/packages/vamsas-schema-and-doc.jar
index a627a03..1c1bad7 100644
Binary files a/packages/vamsas-schema-and-doc.jar and b/packages/vamsas-schema-and-doc.jar differ
diff --git a/schemas/coreObject.xml b/schemas/coreObject.xml
index 52e0f9f..a1417b0 100755
--- a/schemas/coreObject.xml
+++ b/schemas/coreObject.xml
@@ -1,4 +1,25 @@
 <?xml version="1.0" encoding="UTF-8"?>	
+<!--
+   * This file is part of the Vamsas Client version 0.2. 
+   * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
+   *  Andrew Waterhouse and Dominik Lindner.
+   * 
+   * Earlier versions have also been incorporated into Jalview version 2.4 
+   * since 2008, and TOPALi version 2 since 2007.
+   * 
+   * The Vamsas Client is free software: you can redistribute it and/or modify
+   * it under the terms of the GNU Lesser General Public License as published by
+   * the Free Software Foundation, either version 3 of the License, or
+   * (at your option) any later version.
+   *  
+   * The Vamsas Client is distributed in the hope that it will be useful,
+   * but WITHOUT ANY WARRANTY; without even the implied warranty of
+   * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+   * GNU Lesser General Public License for more details.
+   * 
+   * You should have received a copy of the GNU Lesser General Public License
+   * along with the Vamsas Client.  If not, see <http://www.gnu.org/licenses/>.
+-->
 <VAMSAS xmlns="http://www.vamsas.org" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.vamsas.org
 http://www.vamsas.ac.uk/build/VamsasClient/schemas/vamsas.xsd">
 	<DataSet>
diff --git a/schemas/document.xml b/schemas/document.xml
index b2c3ed1..168172a 100644
--- a/schemas/document.xml
+++ b/schemas/document.xml
@@ -1,4 +1,25 @@
 <?xml version="1.0" encoding="UTF-8"?>
+<!--
+   * This file is part of the Vamsas Client version 0.2. 
+   * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
+   *  Andrew Waterhouse and Dominik Lindner.
+   * 
+   * Earlier versions have also been incorporated into Jalview version 2.4 
+   * since 2008, and TOPALi version 2 since 2007.
+   * 
+   * The Vamsas Client is free software: you can redistribute it and/or modify
+   * it under the terms of the GNU Lesser General Public License as published by
+   * the Free Software Foundation, either version 3 of the License, or
+   * (at your option) any later version.
+   *  
+   * The Vamsas Client is distributed in the hope that it will be useful,
+   * but WITHOUT ANY WARRANTY; without even the implied warranty of
+   * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+   * GNU Lesser General Public License for more details.
+   * 
+   * You should have received a copy of the GNU Lesser General Public License
+   * along with the Vamsas Client.  If not, see <http://www.gnu.org/licenses/>.
+-->
 <VamsasDocument xmlns="http://www.vamsas.ac.uk/vamsasDocument"
      xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
      xsi:schemaLocation="http://www.vamsas.ac.uk/vamsasDocument file:vamsasDocument.xsd">
diff --git a/schemas/vamsas.xsd b/schemas/vamsas.xsd
index 8b4518b..94b78ab 100644
--- a/schemas/vamsas.xsd
+++ b/schemas/vamsas.xsd
@@ -1,25 +1,25 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!--
-  This file is part of the Vamsas Client version 0.1. 
-  Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
-   Andrew Waterhouse and Dominik Lindner.
-  
-  Earlier versions have also been incorporated into Jalview version 2.4 
-  since 2008, and TOPALi version 2 since 2007.
-  
-  The Vamsas Client is free software: you can redistribute it and/or modify
-  it under the terms of the GNU Lesser General Public License as published by
-  the Free Software Foundation, either version 3 of the License, or
-  (at your option) any later version.
-   
-  The Vamsas Client is distributed in the hope that it will be useful,
-  but WITHOUT ANY WARRANTY; without even the implied warranty of
-  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-  GNU Lesser General Public License for more details.
-  
-  You should have received a copy of the GNU Lesser General Public License
-  along with the Vamsas Client.  If not, see <http://www.gnu.org/licenses/>.
- -->
+   * This file is part of the Vamsas Client version 0.2. 
+   * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
+   *  Andrew Waterhouse and Dominik Lindner.
+   * 
+   * Earlier versions have also been incorporated into Jalview version 2.4 
+   * since 2008, and TOPALi version 2 since 2007.
+   * 
+   * The Vamsas Client is free software: you can redistribute it and/or modify
+   * it under the terms of the GNU Lesser General Public License as published by
+   * the Free Software Foundation, either version 3 of the License, or
+   * (at your option) any later version.
+   *  
+   * The Vamsas Client is distributed in the hope that it will be useful,
+   * but WITHOUT ANY WARRANTY; without even the implied warranty of
+   * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+   * GNU Lesser General Public License for more details.
+   * 
+   * You should have received a copy of the GNU Lesser General Public License
+   * along with the Vamsas Client.  If not, see <http://www.gnu.org/licenses/>.
+-->
 <!-- edited with XMLSPY v5 rel. 4 U (http://www.xmlspy.com) by MSD (EMBL OUTSTATION THE EBI WELLCOME TRUST GENOME CAMPUS) -->
 <!-- edited with XMLSpy v2006 sp1 U (http://www.altova.com) by ioh[ (o[ih[oh) -->
 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema"
diff --git a/schemas/vamsasDocument.xsd b/schemas/vamsasDocument.xsd
index 0f8caf5..57d721c 100644
--- a/schemas/vamsasDocument.xsd
+++ b/schemas/vamsasDocument.xsd
@@ -1,24 +1,24 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!--
-  This file is part of the Vamsas Client version 0.1. 
-  Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
-   Andrew Waterhouse and Dominik Lindner.
-  
-  Earlier versions have also been incorporated into Jalview version 2.4 
-  since 2008, and TOPALi version 2 since 2007.
-  
-  The Vamsas Client is free software: you can redistribute it and/or modify
-  it under the terms of the GNU Lesser General Public License as published by
-  the Free Software Foundation, either version 3 of the License, or
-  (at your option) any later version.
-   
-  The Vamsas Client is distributed in the hope that it will be useful,
-  but WITHOUT ANY WARRANTY; without even the implied warranty of
-  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-  GNU Lesser General Public License for more details.
-  
-  You should have received a copy of the GNU Lesser General Public License
-  along with the Vamsas Client.  If not, see <http://www.gnu.org/licenses/>.
+   * This file is part of the Vamsas Client version 0.2. 
+   * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
+   *  Andrew Waterhouse and Dominik Lindner.
+   * 
+   * Earlier versions have also been incorporated into Jalview version 2.4 
+   * since 2008, and TOPALi version 2 since 2007.
+   * 
+   * The Vamsas Client is free software: you can redistribute it and/or modify
+   * it under the terms of the GNU Lesser General Public License as published by
+   * the Free Software Foundation, either version 3 of the License, or
+   * (at your option) any later version.
+   *  
+   * The Vamsas Client is distributed in the hope that it will be useful,
+   * but WITHOUT ANY WARRANTY; without even the implied warranty of
+   * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+   * GNU Lesser General Public License for more details.
+   * 
+   * You should have received a copy of the GNU Lesser General Public License
+   * along with the Vamsas Client.  If not, see <http://www.gnu.org/licenses/>.
 -->
 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vdoc="http://www.vamsas.ac.uk/schemas/1.0/vamsasDocument" xmlns:vamsas="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes" targetNamespace="http://www.vamsas.ac.uk/schemas/1.0/vamsasDocument" elementFormDefault="qualified">
     <xs:import namespace="http://www.vamsas.ac.uk/schemas/1.0/vamsasTypes" schemaLocation="vamsas.xsd"/>
diff --git a/src/uk/ac/vamsas/client/AppDataInputStream.java b/src/uk/ac/vamsas/client/AppDataInputStream.java
index 0e03bc8..4e693a9 100644
--- a/src/uk/ac/vamsas/client/AppDataInputStream.java
+++ b/src/uk/ac/vamsas/client/AppDataInputStream.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/AppDataOutputStream.java b/src/uk/ac/vamsas/client/AppDataOutputStream.java
index eaaa7ef..01178de 100644
--- a/src/uk/ac/vamsas/client/AppDataOutputStream.java
+++ b/src/uk/ac/vamsas/client/AppDataOutputStream.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/ClientDocument.java b/src/uk/ac/vamsas/client/ClientDocument.java
index 992555f..03e2162 100644
--- a/src/uk/ac/vamsas/client/ClientDocument.java
+++ b/src/uk/ac/vamsas/client/ClientDocument.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/ClientHandle.java b/src/uk/ac/vamsas/client/ClientHandle.java
index 4d0f936..2c8c25e 100644
--- a/src/uk/ac/vamsas/client/ClientHandle.java
+++ b/src/uk/ac/vamsas/client/ClientHandle.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/Events.java b/src/uk/ac/vamsas/client/Events.java
index 2a2d22e..61aa8ee 100644
--- a/src/uk/ac/vamsas/client/Events.java
+++ b/src/uk/ac/vamsas/client/Events.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/IClient.java b/src/uk/ac/vamsas/client/IClient.java
index c59a26c..118ac76 100644
--- a/src/uk/ac/vamsas/client/IClient.java
+++ b/src/uk/ac/vamsas/client/IClient.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/IClientAppdata.java b/src/uk/ac/vamsas/client/IClientAppdata.java
index 2099995..74f6277 100644
--- a/src/uk/ac/vamsas/client/IClientAppdata.java
+++ b/src/uk/ac/vamsas/client/IClientAppdata.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/IClientDocument.java b/src/uk/ac/vamsas/client/IClientDocument.java
index b2d6763..59c721a 100644
--- a/src/uk/ac/vamsas/client/IClientDocument.java
+++ b/src/uk/ac/vamsas/client/IClientDocument.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/IClientFactory.java b/src/uk/ac/vamsas/client/IClientFactory.java
index 0ec1d79..9b1b608 100644
--- a/src/uk/ac/vamsas/client/IClientFactory.java
+++ b/src/uk/ac/vamsas/client/IClientFactory.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/IObjectUpdate.java b/src/uk/ac/vamsas/client/IObjectUpdate.java
index 3fc32a6..de89784 100644
--- a/src/uk/ac/vamsas/client/IObjectUpdate.java
+++ b/src/uk/ac/vamsas/client/IObjectUpdate.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/IVorbaIdFactory.java b/src/uk/ac/vamsas/client/IVorbaIdFactory.java
index 2d31366..d7c2570 100644
--- a/src/uk/ac/vamsas/client/IVorbaIdFactory.java
+++ b/src/uk/ac/vamsas/client/IVorbaIdFactory.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/Iapp.java b/src/uk/ac/vamsas/client/Iapp.java
index 57f0504..979d00c 100644
--- a/src/uk/ac/vamsas/client/Iapp.java
+++ b/src/uk/ac/vamsas/client/Iapp.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/InvalidSessionDocumentException.java b/src/uk/ac/vamsas/client/InvalidSessionDocumentException.java
index de0c56c..0555e24 100644
--- a/src/uk/ac/vamsas/client/InvalidSessionDocumentException.java
+++ b/src/uk/ac/vamsas/client/InvalidSessionDocumentException.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/InvalidSessionUrnException.java b/src/uk/ac/vamsas/client/InvalidSessionUrnException.java
index bed68a3..a62e1c1 100644
--- a/src/uk/ac/vamsas/client/InvalidSessionUrnException.java
+++ b/src/uk/ac/vamsas/client/InvalidSessionUrnException.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/NoDefaultSessionException.java b/src/uk/ac/vamsas/client/NoDefaultSessionException.java
index 61fdd59..f75380d 100644
--- a/src/uk/ac/vamsas/client/NoDefaultSessionException.java
+++ b/src/uk/ac/vamsas/client/NoDefaultSessionException.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/SessionHandle.java b/src/uk/ac/vamsas/client/SessionHandle.java
index 72c6d98..a22cc4a 100644
--- a/src/uk/ac/vamsas/client/SessionHandle.java
+++ b/src/uk/ac/vamsas/client/SessionHandle.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/SessionUrn.java b/src/uk/ac/vamsas/client/SessionUrn.java
index 7789d2d..3c8ad2b 100644
--- a/src/uk/ac/vamsas/client/SessionUrn.java
+++ b/src/uk/ac/vamsas/client/SessionUrn.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/UserHandle.java b/src/uk/ac/vamsas/client/UserHandle.java
index 5fe4280..a073d3e 100644
--- a/src/uk/ac/vamsas/client/UserHandle.java
+++ b/src/uk/ac/vamsas/client/UserHandle.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/Vobject.java b/src/uk/ac/vamsas/client/Vobject.java
index 23cb8e0..c25a873 100644
--- a/src/uk/ac/vamsas/client/Vobject.java
+++ b/src/uk/ac/vamsas/client/Vobject.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/Vobjhash.java b/src/uk/ac/vamsas/client/Vobjhash.java
index 6052faf..e639b93 100644
--- a/src/uk/ac/vamsas/client/Vobjhash.java
+++ b/src/uk/ac/vamsas/client/Vobjhash.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/VorbaId.java b/src/uk/ac/vamsas/client/VorbaId.java
index 6e756d9..3d0c852 100644
--- a/src/uk/ac/vamsas/client/VorbaId.java
+++ b/src/uk/ac/vamsas/client/VorbaId.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/VorbaIdFactory.java b/src/uk/ac/vamsas/client/VorbaIdFactory.java
index 5dbd5bb..f15df09 100644
--- a/src/uk/ac/vamsas/client/VorbaIdFactory.java
+++ b/src/uk/ac/vamsas/client/VorbaIdFactory.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/VorbaXmlBinder.java b/src/uk/ac/vamsas/client/VorbaXmlBinder.java
index 016700a..994e1a1 100644
--- a/src/uk/ac/vamsas/client/VorbaXmlBinder.java
+++ b/src/uk/ac/vamsas/client/VorbaXmlBinder.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/picking/CustomMessage.java b/src/uk/ac/vamsas/client/picking/CustomMessage.java
index f422277..9f0a267 100644
--- a/src/uk/ac/vamsas/client/picking/CustomMessage.java
+++ b/src/uk/ac/vamsas/client/picking/CustomMessage.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/picking/IMessageHandler.java b/src/uk/ac/vamsas/client/picking/IMessageHandler.java
index 0fadcc2..d2c5fb9 100644
--- a/src/uk/ac/vamsas/client/picking/IMessageHandler.java
+++ b/src/uk/ac/vamsas/client/picking/IMessageHandler.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/picking/IPickManager.java b/src/uk/ac/vamsas/client/picking/IPickManager.java
index 0496ab8..593df0b 100644
--- a/src/uk/ac/vamsas/client/picking/IPickManager.java
+++ b/src/uk/ac/vamsas/client/picking/IPickManager.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/picking/Message.java b/src/uk/ac/vamsas/client/picking/Message.java
index 308fdfe..87b3c68 100644
--- a/src/uk/ac/vamsas/client/picking/Message.java
+++ b/src/uk/ac/vamsas/client/picking/Message.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/picking/MouseOverMessage.java b/src/uk/ac/vamsas/client/picking/MouseOverMessage.java
index 7c04eb9..e039f1f 100644
--- a/src/uk/ac/vamsas/client/picking/MouseOverMessage.java
+++ b/src/uk/ac/vamsas/client/picking/MouseOverMessage.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/picking/PickEndPoint.java b/src/uk/ac/vamsas/client/picking/PickEndPoint.java
index c9c7e71..6ff9818 100644
--- a/src/uk/ac/vamsas/client/picking/PickEndPoint.java
+++ b/src/uk/ac/vamsas/client/picking/PickEndPoint.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/picking/PickServer.java b/src/uk/ac/vamsas/client/picking/PickServer.java
index 7a38be7..b894d2d 100644
--- a/src/uk/ac/vamsas/client/picking/PickServer.java
+++ b/src/uk/ac/vamsas/client/picking/PickServer.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/picking/SelectionMessage.java b/src/uk/ac/vamsas/client/picking/SelectionMessage.java
index eb379c4..3736233 100644
--- a/src/uk/ac/vamsas/client/picking/SelectionMessage.java
+++ b/src/uk/ac/vamsas/client/picking/SelectionMessage.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/picking/SocketManager.java b/src/uk/ac/vamsas/client/picking/SocketManager.java
index a4ce769..5353a0d 100644
--- a/src/uk/ac/vamsas/client/picking/SocketManager.java
+++ b/src/uk/ac/vamsas/client/picking/SocketManager.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/picking/TestApp.java b/src/uk/ac/vamsas/client/picking/TestApp.java
index 72a49a5..f97a3d3 100644
--- a/src/uk/ac/vamsas/client/picking/TestApp.java
+++ b/src/uk/ac/vamsas/client/picking/TestApp.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/ArchiveUrn.java b/src/uk/ac/vamsas/client/simpleclient/ArchiveUrn.java
index 84f8238..dae61b5 100644
--- a/src/uk/ac/vamsas/client/simpleclient/ArchiveUrn.java
+++ b/src/uk/ac/vamsas/client/simpleclient/ArchiveUrn.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/ClientDocument.java b/src/uk/ac/vamsas/client/simpleclient/ClientDocument.java
index 9fbfc15..f518f71 100644
--- a/src/uk/ac/vamsas/client/simpleclient/ClientDocument.java
+++ b/src/uk/ac/vamsas/client/simpleclient/ClientDocument.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/ClientSessionFileWatcherElement.java b/src/uk/ac/vamsas/client/simpleclient/ClientSessionFileWatcherElement.java
index ea21890..7e0beec 100644
--- a/src/uk/ac/vamsas/client/simpleclient/ClientSessionFileWatcherElement.java
+++ b/src/uk/ac/vamsas/client/simpleclient/ClientSessionFileWatcherElement.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/ClientsFile.java b/src/uk/ac/vamsas/client/simpleclient/ClientsFile.java
index f83324a..2b22787 100644
--- a/src/uk/ac/vamsas/client/simpleclient/ClientsFile.java
+++ b/src/uk/ac/vamsas/client/simpleclient/ClientsFile.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/EventGeneratorThread.java b/src/uk/ac/vamsas/client/simpleclient/EventGeneratorThread.java
index 47c84ac..504c6f8 100644
--- a/src/uk/ac/vamsas/client/simpleclient/EventGeneratorThread.java
+++ b/src/uk/ac/vamsas/client/simpleclient/EventGeneratorThread.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/FileLock.java b/src/uk/ac/vamsas/client/simpleclient/FileLock.java
index 9f91268..cc5f0c9 100644
--- a/src/uk/ac/vamsas/client/simpleclient/FileLock.java
+++ b/src/uk/ac/vamsas/client/simpleclient/FileLock.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/FileWatcher.java b/src/uk/ac/vamsas/client/simpleclient/FileWatcher.java
index 1fc1476..7ac80a2 100644
--- a/src/uk/ac/vamsas/client/simpleclient/FileWatcher.java
+++ b/src/uk/ac/vamsas/client/simpleclient/FileWatcher.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/IdFactory.java b/src/uk/ac/vamsas/client/simpleclient/IdFactory.java
index 582ff39..96c822a 100644
--- a/src/uk/ac/vamsas/client/simpleclient/IdFactory.java
+++ b/src/uk/ac/vamsas/client/simpleclient/IdFactory.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/ListFile.java b/src/uk/ac/vamsas/client/simpleclient/ListFile.java
index e3ec58c..f69f8c9 100644
--- a/src/uk/ac/vamsas/client/simpleclient/ListFile.java
+++ b/src/uk/ac/vamsas/client/simpleclient/ListFile.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/Lock.java b/src/uk/ac/vamsas/client/simpleclient/Lock.java
index bf182c1..6e2de38 100644
--- a/src/uk/ac/vamsas/client/simpleclient/Lock.java
+++ b/src/uk/ac/vamsas/client/simpleclient/Lock.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/LockFactory.java b/src/uk/ac/vamsas/client/simpleclient/LockFactory.java
index a392db2..c37ea6a 100644
--- a/src/uk/ac/vamsas/client/simpleclient/LockFactory.java
+++ b/src/uk/ac/vamsas/client/simpleclient/LockFactory.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/LockTimeoutException.java b/src/uk/ac/vamsas/client/simpleclient/LockTimeoutException.java
index fa5d14f..27b0bf9 100644
--- a/src/uk/ac/vamsas/client/simpleclient/LockTimeoutException.java
+++ b/src/uk/ac/vamsas/client/simpleclient/LockTimeoutException.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/LockedFileOutputStream.java b/src/uk/ac/vamsas/client/simpleclient/LockedFileOutputStream.java
index cf2d7aa..47a66a7 100644
--- a/src/uk/ac/vamsas/client/simpleclient/LockedFileOutputStream.java
+++ b/src/uk/ac/vamsas/client/simpleclient/LockedFileOutputStream.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/NativeLock.java b/src/uk/ac/vamsas/client/simpleclient/NativeLock.java
index 4255858..d0b410c 100644
--- a/src/uk/ac/vamsas/client/simpleclient/NativeLock.java
+++ b/src/uk/ac/vamsas/client/simpleclient/NativeLock.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/SessionFile.java b/src/uk/ac/vamsas/client/simpleclient/SessionFile.java
index 0c35fe2..c1b2c32 100644
--- a/src/uk/ac/vamsas/client/simpleclient/SessionFile.java
+++ b/src/uk/ac/vamsas/client/simpleclient/SessionFile.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/SessionFileWatcherElement.java b/src/uk/ac/vamsas/client/simpleclient/SessionFileWatcherElement.java
index 1ef053f..7090bc5 100644
--- a/src/uk/ac/vamsas/client/simpleclient/SessionFileWatcherElement.java
+++ b/src/uk/ac/vamsas/client/simpleclient/SessionFileWatcherElement.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/SessionFlagFile.java b/src/uk/ac/vamsas/client/simpleclient/SessionFlagFile.java
index fab3ea9..1e2a323 100644
--- a/src/uk/ac/vamsas/client/simpleclient/SessionFlagFile.java
+++ b/src/uk/ac/vamsas/client/simpleclient/SessionFlagFile.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/SessionFlagWatcherElement.java b/src/uk/ac/vamsas/client/simpleclient/SessionFlagWatcherElement.java
index 0c87398..9c833a4 100644
--- a/src/uk/ac/vamsas/client/simpleclient/SessionFlagWatcherElement.java
+++ b/src/uk/ac/vamsas/client/simpleclient/SessionFlagWatcherElement.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/SessionUrn.java b/src/uk/ac/vamsas/client/simpleclient/SessionUrn.java
index 36ca50a..0dfe65a 100644
--- a/src/uk/ac/vamsas/client/simpleclient/SessionUrn.java
+++ b/src/uk/ac/vamsas/client/simpleclient/SessionUrn.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/SessionsFile.java b/src/uk/ac/vamsas/client/simpleclient/SessionsFile.java
index afcdb1c..ab26d20 100644
--- a/src/uk/ac/vamsas/client/simpleclient/SessionsFile.java
+++ b/src/uk/ac/vamsas/client/simpleclient/SessionsFile.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/SimpleClient.java b/src/uk/ac/vamsas/client/simpleclient/SimpleClient.java
index 6e40df0..ff432a4 100644
--- a/src/uk/ac/vamsas/client/simpleclient/SimpleClient.java
+++ b/src/uk/ac/vamsas/client/simpleclient/SimpleClient.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/SimpleClientAppdata.java b/src/uk/ac/vamsas/client/simpleclient/SimpleClientAppdata.java
index 183d114..77811c5 100644
--- a/src/uk/ac/vamsas/client/simpleclient/SimpleClientAppdata.java
+++ b/src/uk/ac/vamsas/client/simpleclient/SimpleClientAppdata.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/SimpleClientConfig.java b/src/uk/ac/vamsas/client/simpleclient/SimpleClientConfig.java
index 1728f18..4a0a605 100644
--- a/src/uk/ac/vamsas/client/simpleclient/SimpleClientConfig.java
+++ b/src/uk/ac/vamsas/client/simpleclient/SimpleClientConfig.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/SimpleClientFactory.java b/src/uk/ac/vamsas/client/simpleclient/SimpleClientFactory.java
index d85127f..3d9a534 100644
--- a/src/uk/ac/vamsas/client/simpleclient/SimpleClientFactory.java
+++ b/src/uk/ac/vamsas/client/simpleclient/SimpleClientFactory.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/SimpleDocBinding.java b/src/uk/ac/vamsas/client/simpleclient/SimpleDocBinding.java
index 895bb0f..3b19cba 100644
--- a/src/uk/ac/vamsas/client/simpleclient/SimpleDocBinding.java
+++ b/src/uk/ac/vamsas/client/simpleclient/SimpleDocBinding.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/SimpleDocument.java b/src/uk/ac/vamsas/client/simpleclient/SimpleDocument.java
index f4b7a15..1661d96 100644
--- a/src/uk/ac/vamsas/client/simpleclient/SimpleDocument.java
+++ b/src/uk/ac/vamsas/client/simpleclient/SimpleDocument.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/SimplePickManager.java b/src/uk/ac/vamsas/client/simpleclient/SimplePickManager.java
index 1eabeac..3865a8d 100644
--- a/src/uk/ac/vamsas/client/simpleclient/SimplePickManager.java
+++ b/src/uk/ac/vamsas/client/simpleclient/SimplePickManager.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/SimpleSessionHandle.java b/src/uk/ac/vamsas/client/simpleclient/SimpleSessionHandle.java
index b095557..18e06e4 100644
--- a/src/uk/ac/vamsas/client/simpleclient/SimpleSessionHandle.java
+++ b/src/uk/ac/vamsas/client/simpleclient/SimpleSessionHandle.java
@@ -1,3 +1,24 @@
+/*
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ *  Andrew Waterhouse and Dominik Lindner.
+ * 
+ * Earlier versions have also been incorporated into Jalview version 2.4 
+ * since 2008, and TOPALi version 2 since 2007.
+ * 
+ * The Vamsas Client is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *  
+ * The Vamsas Client is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Lesser General Public License for more details.
+ * 
+ * You should have received a copy of the GNU Lesser General Public License
+ * along with the Vamsas Client.  If not, see <http://www.gnu.org/licenses/>.
+ */
 package uk.ac.vamsas.client.simpleclient;
 
 import java.io.File;
diff --git a/src/uk/ac/vamsas/client/simpleclient/SimpleSessionManager.java b/src/uk/ac/vamsas/client/simpleclient/SimpleSessionManager.java
index 2c562d1..9b3954a 100644
--- a/src/uk/ac/vamsas/client/simpleclient/SimpleSessionManager.java
+++ b/src/uk/ac/vamsas/client/simpleclient/SimpleSessionManager.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/VamsasArchive.java b/src/uk/ac/vamsas/client/simpleclient/VamsasArchive.java
index 9306ca7..0747a6f 100644
--- a/src/uk/ac/vamsas/client/simpleclient/VamsasArchive.java
+++ b/src/uk/ac/vamsas/client/simpleclient/VamsasArchive.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/VamsasArchiveReader.java b/src/uk/ac/vamsas/client/simpleclient/VamsasArchiveReader.java
index f863eb7..dd0fe7c 100644
--- a/src/uk/ac/vamsas/client/simpleclient/VamsasArchiveReader.java
+++ b/src/uk/ac/vamsas/client/simpleclient/VamsasArchiveReader.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/VamsasFile.java b/src/uk/ac/vamsas/client/simpleclient/VamsasFile.java
index e0c6f90..e0c31d6 100644
--- a/src/uk/ac/vamsas/client/simpleclient/VamsasFile.java
+++ b/src/uk/ac/vamsas/client/simpleclient/VamsasFile.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/VamsasFileWatcherElement.java b/src/uk/ac/vamsas/client/simpleclient/VamsasFileWatcherElement.java
index 06fda30..6b04b11 100644
--- a/src/uk/ac/vamsas/client/simpleclient/VamsasFileWatcherElement.java
+++ b/src/uk/ac/vamsas/client/simpleclient/VamsasFileWatcherElement.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/VamsasFileWatcherThread.java b/src/uk/ac/vamsas/client/simpleclient/VamsasFileWatcherThread.java
index 7b0e858..c3a6de2 100644
--- a/src/uk/ac/vamsas/client/simpleclient/VamsasFileWatcherThread.java
+++ b/src/uk/ac/vamsas/client/simpleclient/VamsasFileWatcherThread.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/VamsasSession.java b/src/uk/ac/vamsas/client/simpleclient/VamsasSession.java
index ffbdfa6..cf139a0 100644
--- a/src/uk/ac/vamsas/client/simpleclient/VamsasSession.java
+++ b/src/uk/ac/vamsas/client/simpleclient/VamsasSession.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/WatcherCallBack.java b/src/uk/ac/vamsas/client/simpleclient/WatcherCallBack.java
index 7c7e5b1..f7765bf 100644
--- a/src/uk/ac/vamsas/client/simpleclient/WatcherCallBack.java
+++ b/src/uk/ac/vamsas/client/simpleclient/WatcherCallBack.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/client/simpleclient/WatcherElement.java b/src/uk/ac/vamsas/client/simpleclient/WatcherElement.java
index 80f9606..058125a 100644
--- a/src/uk/ac/vamsas/client/simpleclient/WatcherElement.java
+++ b/src/uk/ac/vamsas/client/simpleclient/WatcherElement.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/DocumentUpdaterEngine.java b/src/uk/ac/vamsas/objects/DocumentUpdaterEngine.java
index 715d7e4..19cae2d 100644
--- a/src/uk/ac/vamsas/objects/DocumentUpdaterEngine.java
+++ b/src/uk/ac/vamsas/objects/DocumentUpdaterEngine.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/EmptyDocumentUpdater.java b/src/uk/ac/vamsas/objects/EmptyDocumentUpdater.java
index 75a65f8..0be0d14 100644
--- a/src/uk/ac/vamsas/objects/EmptyDocumentUpdater.java
+++ b/src/uk/ac/vamsas/objects/EmptyDocumentUpdater.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/IDocumentUpdater.java b/src/uk/ac/vamsas/objects/IDocumentUpdater.java
index c8ffc09..07d5a4f 100644
--- a/src/uk/ac/vamsas/objects/IDocumentUpdater.java
+++ b/src/uk/ac/vamsas/objects/IDocumentUpdater.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/IVorbaBinding.java b/src/uk/ac/vamsas/objects/IVorbaBinding.java
index bc7198f..798d558 100644
--- a/src/uk/ac/vamsas/objects/IVorbaBinding.java
+++ b/src/uk/ac/vamsas/objects/IVorbaBinding.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Alignment.java b/src/uk/ac/vamsas/objects/core/Alignment.java
index bc95178..b6a22aa 100644
--- a/src/uk/ac/vamsas/objects/core/Alignment.java
+++ b/src/uk/ac/vamsas/objects/core/Alignment.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/AlignmentAnnotation.java b/src/uk/ac/vamsas/objects/core/AlignmentAnnotation.java
index 4e5c695..cd9331a 100644
--- a/src/uk/ac/vamsas/objects/core/AlignmentAnnotation.java
+++ b/src/uk/ac/vamsas/objects/core/AlignmentAnnotation.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/AlignmentSequence.java b/src/uk/ac/vamsas/objects/core/AlignmentSequence.java
index 58c866f..fb4dba4 100644
--- a/src/uk/ac/vamsas/objects/core/AlignmentSequence.java
+++ b/src/uk/ac/vamsas/objects/core/AlignmentSequence.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/AlignmentSequenceAnnotation.java b/src/uk/ac/vamsas/objects/core/AlignmentSequenceAnnotation.java
index ae36079..36809f1 100644
--- a/src/uk/ac/vamsas/objects/core/AlignmentSequenceAnnotation.java
+++ b/src/uk/ac/vamsas/objects/core/AlignmentSequenceAnnotation.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/AnnotationElement.java b/src/uk/ac/vamsas/objects/core/AnnotationElement.java
index 45cb5c7..df94767 100644
--- a/src/uk/ac/vamsas/objects/core/AnnotationElement.java
+++ b/src/uk/ac/vamsas/objects/core/AnnotationElement.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/AppData.java b/src/uk/ac/vamsas/objects/core/AppData.java
index 221aadd..85ba4d1 100644
--- a/src/uk/ac/vamsas/objects/core/AppData.java
+++ b/src/uk/ac/vamsas/objects/core/AppData.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/ApplicationData.java b/src/uk/ac/vamsas/objects/core/ApplicationData.java
index b980483..b11c7de 100644
--- a/src/uk/ac/vamsas/objects/core/ApplicationData.java
+++ b/src/uk/ac/vamsas/objects/core/ApplicationData.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Attachment.java b/src/uk/ac/vamsas/objects/core/Attachment.java
index 10b36ec..40f6acf 100644
--- a/src/uk/ac/vamsas/objects/core/Attachment.java
+++ b/src/uk/ac/vamsas/objects/core/Attachment.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Common.java b/src/uk/ac/vamsas/objects/core/Common.java
index 03e74ba..e0c1647 100644
--- a/src/uk/ac/vamsas/objects/core/Common.java
+++ b/src/uk/ac/vamsas/objects/core/Common.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/DataSet.java b/src/uk/ac/vamsas/objects/core/DataSet.java
index 150771c..8e3b7ad 100644
--- a/src/uk/ac/vamsas/objects/core/DataSet.java
+++ b/src/uk/ac/vamsas/objects/core/DataSet.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/DataSetAnnotations.java b/src/uk/ac/vamsas/objects/core/DataSetAnnotations.java
index 43bc9f9..33341c5 100644
--- a/src/uk/ac/vamsas/objects/core/DataSetAnnotations.java
+++ b/src/uk/ac/vamsas/objects/core/DataSetAnnotations.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/DbRef.java b/src/uk/ac/vamsas/objects/core/DbRef.java
index 59905b0..1683cb8 100644
--- a/src/uk/ac/vamsas/objects/core/DbRef.java
+++ b/src/uk/ac/vamsas/objects/core/DbRef.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Entry.java b/src/uk/ac/vamsas/objects/core/Entry.java
index ac6093c..7cf695f 100644
--- a/src/uk/ac/vamsas/objects/core/Entry.java
+++ b/src/uk/ac/vamsas/objects/core/Entry.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Glyph.java b/src/uk/ac/vamsas/objects/core/Glyph.java
index 20fe7d6..132ff04 100644
--- a/src/uk/ac/vamsas/objects/core/Glyph.java
+++ b/src/uk/ac/vamsas/objects/core/Glyph.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Input.java b/src/uk/ac/vamsas/objects/core/Input.java
index 3911cdc..a3288db 100644
--- a/src/uk/ac/vamsas/objects/core/Input.java
+++ b/src/uk/ac/vamsas/objects/core/Input.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Instance.java b/src/uk/ac/vamsas/objects/core/Instance.java
index a116b6a..b04b427 100644
--- a/src/uk/ac/vamsas/objects/core/Instance.java
+++ b/src/uk/ac/vamsas/objects/core/Instance.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Link.java b/src/uk/ac/vamsas/objects/core/Link.java
index 5c34acb..20a90a5 100644
--- a/src/uk/ac/vamsas/objects/core/Link.java
+++ b/src/uk/ac/vamsas/objects/core/Link.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Local.java b/src/uk/ac/vamsas/objects/core/Local.java
index e291177..06d6604 100644
--- a/src/uk/ac/vamsas/objects/core/Local.java
+++ b/src/uk/ac/vamsas/objects/core/Local.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/LockFile.java b/src/uk/ac/vamsas/objects/core/LockFile.java
index 418e743..c2c0ccd 100644
--- a/src/uk/ac/vamsas/objects/core/LockFile.java
+++ b/src/uk/ac/vamsas/objects/core/LockFile.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Map.java b/src/uk/ac/vamsas/objects/core/Map.java
index 06ea745..eee0005 100644
--- a/src/uk/ac/vamsas/objects/core/Map.java
+++ b/src/uk/ac/vamsas/objects/core/Map.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/MapList.java b/src/uk/ac/vamsas/objects/core/MapList.java
index 770d07f..ca9a923 100644
--- a/src/uk/ac/vamsas/objects/core/MapList.java
+++ b/src/uk/ac/vamsas/objects/core/MapList.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/MapRangeType.java b/src/uk/ac/vamsas/objects/core/MapRangeType.java
index e5d5ee9..9f00d61 100644
--- a/src/uk/ac/vamsas/objects/core/MapRangeType.java
+++ b/src/uk/ac/vamsas/objects/core/MapRangeType.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/MapType.java b/src/uk/ac/vamsas/objects/core/MapType.java
index 601f4cc..d266561 100644
--- a/src/uk/ac/vamsas/objects/core/MapType.java
+++ b/src/uk/ac/vamsas/objects/core/MapType.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Mapped.java b/src/uk/ac/vamsas/objects/core/Mapped.java
index 497d29a..07d8ca2 100644
--- a/src/uk/ac/vamsas/objects/core/Mapped.java
+++ b/src/uk/ac/vamsas/objects/core/Mapped.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Mapping.java b/src/uk/ac/vamsas/objects/core/Mapping.java
index 7ab5e0a..17340e6 100644
--- a/src/uk/ac/vamsas/objects/core/Mapping.java
+++ b/src/uk/ac/vamsas/objects/core/Mapping.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Newick.java b/src/uk/ac/vamsas/objects/core/Newick.java
index ac9e2cf..4c37bb0 100644
--- a/src/uk/ac/vamsas/objects/core/Newick.java
+++ b/src/uk/ac/vamsas/objects/core/Newick.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/NodeType.java b/src/uk/ac/vamsas/objects/core/NodeType.java
index 1109722..95f0cc6 100644
--- a/src/uk/ac/vamsas/objects/core/NodeType.java
+++ b/src/uk/ac/vamsas/objects/core/NodeType.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Param.java b/src/uk/ac/vamsas/objects/core/Param.java
index d55f705..d73bbe3 100644
--- a/src/uk/ac/vamsas/objects/core/Param.java
+++ b/src/uk/ac/vamsas/objects/core/Param.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Pos.java b/src/uk/ac/vamsas/objects/core/Pos.java
index 4b7a48f..b32c269 100644
--- a/src/uk/ac/vamsas/objects/core/Pos.java
+++ b/src/uk/ac/vamsas/objects/core/Pos.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Property.java b/src/uk/ac/vamsas/objects/core/Property.java
index 1c63807..a0881c6 100644
--- a/src/uk/ac/vamsas/objects/core/Property.java
+++ b/src/uk/ac/vamsas/objects/core/Property.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Provenance.java b/src/uk/ac/vamsas/objects/core/Provenance.java
index 54b5ae1..003cec9 100644
--- a/src/uk/ac/vamsas/objects/core/Provenance.java
+++ b/src/uk/ac/vamsas/objects/core/Provenance.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Range.java b/src/uk/ac/vamsas/objects/core/Range.java
index 7889a17..0cde5f6 100644
--- a/src/uk/ac/vamsas/objects/core/Range.java
+++ b/src/uk/ac/vamsas/objects/core/Range.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/RangeAnnotation.java b/src/uk/ac/vamsas/objects/core/RangeAnnotation.java
index 07c3d41..e249cfd 100644
--- a/src/uk/ac/vamsas/objects/core/RangeAnnotation.java
+++ b/src/uk/ac/vamsas/objects/core/RangeAnnotation.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/RangeType.java b/src/uk/ac/vamsas/objects/core/RangeType.java
index b2573e9..390bde8 100644
--- a/src/uk/ac/vamsas/objects/core/RangeType.java
+++ b/src/uk/ac/vamsas/objects/core/RangeType.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/ReferenceType.java b/src/uk/ac/vamsas/objects/core/ReferenceType.java
index e6a98da..8dbba29 100644
--- a/src/uk/ac/vamsas/objects/core/ReferenceType.java
+++ b/src/uk/ac/vamsas/objects/core/ReferenceType.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Score.java b/src/uk/ac/vamsas/objects/core/Score.java
index bf0ce88..7bcbc6f 100644
--- a/src/uk/ac/vamsas/objects/core/Score.java
+++ b/src/uk/ac/vamsas/objects/core/Score.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Seg.java b/src/uk/ac/vamsas/objects/core/Seg.java
index 5ad851d..7a709e6 100644
--- a/src/uk/ac/vamsas/objects/core/Seg.java
+++ b/src/uk/ac/vamsas/objects/core/Seg.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Sequence.java b/src/uk/ac/vamsas/objects/core/Sequence.java
index 461b7d1..5bbc73f 100644
--- a/src/uk/ac/vamsas/objects/core/Sequence.java
+++ b/src/uk/ac/vamsas/objects/core/Sequence.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/SequenceMapping.java b/src/uk/ac/vamsas/objects/core/SequenceMapping.java
index 9370bae..7cc8fd2 100644
--- a/src/uk/ac/vamsas/objects/core/SequenceMapping.java
+++ b/src/uk/ac/vamsas/objects/core/SequenceMapping.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/SequenceType.java b/src/uk/ac/vamsas/objects/core/SequenceType.java
index 1655f75..9eb8647 100644
--- a/src/uk/ac/vamsas/objects/core/SequenceType.java
+++ b/src/uk/ac/vamsas/objects/core/SequenceType.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Tree.java b/src/uk/ac/vamsas/objects/core/Tree.java
index 12b8031..e5992a3 100644
--- a/src/uk/ac/vamsas/objects/core/Tree.java
+++ b/src/uk/ac/vamsas/objects/core/Tree.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Treenode.java b/src/uk/ac/vamsas/objects/core/Treenode.java
index 51ecd7e..20459ca 100644
--- a/src/uk/ac/vamsas/objects/core/Treenode.java
+++ b/src/uk/ac/vamsas/objects/core/Treenode.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/User.java b/src/uk/ac/vamsas/objects/core/User.java
index 957c99c..f75e81a 100644
--- a/src/uk/ac/vamsas/objects/core/User.java
+++ b/src/uk/ac/vamsas/objects/core/User.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/VAMSAS.java b/src/uk/ac/vamsas/objects/core/VAMSAS.java
index 320dcb5..1316a13 100644
--- a/src/uk/ac/vamsas/objects/core/VAMSAS.java
+++ b/src/uk/ac/vamsas/objects/core/VAMSAS.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/VamsasDocument.java b/src/uk/ac/vamsas/objects/core/VamsasDocument.java
index c964ec6..d6f4933 100644
--- a/src/uk/ac/vamsas/objects/core/VamsasDocument.java
+++ b/src/uk/ac/vamsas/objects/core/VamsasDocument.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Vref.java b/src/uk/ac/vamsas/objects/core/Vref.java
index 78c50c5..5f1809c 100644
--- a/src/uk/ac/vamsas/objects/core/Vref.java
+++ b/src/uk/ac/vamsas/objects/core/Vref.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/Vxref.java b/src/uk/ac/vamsas/objects/core/Vxref.java
index c000265..5dc3499 100644
--- a/src/uk/ac/vamsas/objects/core/Vxref.java
+++ b/src/uk/ac/vamsas/objects/core/Vxref.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/AlignmentAnnotationDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/AlignmentAnnotationDescriptor.java
index 179b9e5..ac65214 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/AlignmentAnnotationDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/AlignmentAnnotationDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/AlignmentDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/AlignmentDescriptor.java
index 94d9c08..95474e5 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/AlignmentDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/AlignmentDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/AlignmentSequenceAnnotationDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/AlignmentSequenceAnnotationDescriptor.java
index ad6b662..00a58ea 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/AlignmentSequenceAnnotationDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/AlignmentSequenceAnnotationDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/AlignmentSequenceDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/AlignmentSequenceDescriptor.java
index 5478a26..e173d25 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/AlignmentSequenceDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/AlignmentSequenceDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/AnnotationElementDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/AnnotationElementDescriptor.java
index 159293b..25a54d5 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/AnnotationElementDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/AnnotationElementDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/AppDataDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/AppDataDescriptor.java
index 21ce243..e84d75a 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/AppDataDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/AppDataDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/ApplicationDataDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/ApplicationDataDescriptor.java
index 80688cd..6f68d52 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/ApplicationDataDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/ApplicationDataDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/AttachmentDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/AttachmentDescriptor.java
index be5adb4..c0cab59 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/AttachmentDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/AttachmentDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/CommonDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/CommonDescriptor.java
index 80c4608..1505f14 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/CommonDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/CommonDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/DataSetAnnotationsDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/DataSetAnnotationsDescriptor.java
index a829b07..fc4caf9 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/DataSetAnnotationsDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/DataSetAnnotationsDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/DataSetDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/DataSetDescriptor.java
index 16d6cc2..47cc064 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/DataSetDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/DataSetDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/DbRefDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/DbRefDescriptor.java
index eee7f9a..0c2bd81 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/DbRefDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/DbRefDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/EntryDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/EntryDescriptor.java
index 3041196..18c3537 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/EntryDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/EntryDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/GlyphDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/GlyphDescriptor.java
index c171da0..9a9fb07 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/GlyphDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/GlyphDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/InputDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/InputDescriptor.java
index 17267bb..d379b42 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/InputDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/InputDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/InstanceDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/InstanceDescriptor.java
index a9b62e3..83089cc 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/InstanceDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/InstanceDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/LinkDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/LinkDescriptor.java
index fde0663..2259ebe 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/LinkDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/LinkDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/LocalDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/LocalDescriptor.java
index d172d0b..002ef4b 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/LocalDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/LocalDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/LockFileDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/LockFileDescriptor.java
index d073c6d..75f0434 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/LockFileDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/LockFileDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/MapDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/MapDescriptor.java
index 6653ba6..959bad7 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/MapDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/MapDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/MapListDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/MapListDescriptor.java
index 08b1b2f..c301eba 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/MapListDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/MapListDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/MapRangeTypeDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/MapRangeTypeDescriptor.java
index e7af789..0426491 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/MapRangeTypeDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/MapRangeTypeDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/MapTypeDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/MapTypeDescriptor.java
index a6abd90..05597cc 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/MapTypeDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/MapTypeDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/MappedDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/MappedDescriptor.java
index f5e7d8b..84f1e66 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/MappedDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/MappedDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/MappingDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/MappingDescriptor.java
index 5105668..b1de812 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/MappingDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/MappingDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/NewickDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/NewickDescriptor.java
index 05a7425..22edda9 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/NewickDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/NewickDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/NodeTypeDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/NodeTypeDescriptor.java
index 69c0ae2..d18f105 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/NodeTypeDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/NodeTypeDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/ParamDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/ParamDescriptor.java
index 89211c6..c4a703b 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/ParamDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/ParamDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/PosDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/PosDescriptor.java
index c7a3676..2f05e46 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/PosDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/PosDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/PropertyDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/PropertyDescriptor.java
index 8a92e0f..3c269f8 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/PropertyDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/PropertyDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/ProvenanceDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/ProvenanceDescriptor.java
index 91466d4..ba67381 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/ProvenanceDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/ProvenanceDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/RangeAnnotationDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/RangeAnnotationDescriptor.java
index a70b904..1f67a14 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/RangeAnnotationDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/RangeAnnotationDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/RangeDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/RangeDescriptor.java
index f196666..bfcb9d2 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/RangeDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/RangeDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/RangeTypeDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/RangeTypeDescriptor.java
index 0fba2ca..d723b8f 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/RangeTypeDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/RangeTypeDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/ReferenceTypeDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/ReferenceTypeDescriptor.java
index 7c20d00..bb2406f 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/ReferenceTypeDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/ReferenceTypeDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/ScoreDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/ScoreDescriptor.java
index 549384a..7560b20 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/ScoreDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/ScoreDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/SegDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/SegDescriptor.java
index 6aa64fd..ce12bd5 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/SegDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/SegDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/SequenceDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/SequenceDescriptor.java
index d67e4e8..27f9ee6 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/SequenceDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/SequenceDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/SequenceMappingDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/SequenceMappingDescriptor.java
index e5faaad..fb9e47a 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/SequenceMappingDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/SequenceMappingDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/SequenceTypeDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/SequenceTypeDescriptor.java
index 607e999..41ac65a 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/SequenceTypeDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/SequenceTypeDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/TreeDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/TreeDescriptor.java
index 8a8907a..561b0f3 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/TreeDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/TreeDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/TreenodeDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/TreenodeDescriptor.java
index 8e16388..954497c 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/TreenodeDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/TreenodeDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/UserDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/UserDescriptor.java
index 4d5a95d..fb938c2 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/UserDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/UserDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/VAMSASDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/VAMSASDescriptor.java
index 3402057..320815d 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/VAMSASDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/VAMSASDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/VamsasDocumentDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/VamsasDocumentDescriptor.java
index a7bf199..7c698fe 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/VamsasDocumentDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/VamsasDocumentDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/VrefDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/VrefDescriptor.java
index cd06385..16db7c8 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/VrefDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/VrefDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/core/descriptors/VxrefDescriptor.java b/src/uk/ac/vamsas/objects/core/descriptors/VxrefDescriptor.java
index 78fa9c1..72ce6f2 100644
--- a/src/uk/ac/vamsas/objects/core/descriptors/VxrefDescriptor.java
+++ b/src/uk/ac/vamsas/objects/core/descriptors/VxrefDescriptor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/utils/AppDataReference.java b/src/uk/ac/vamsas/objects/utils/AppDataReference.java
index efdf0c4..d1ad439 100644
--- a/src/uk/ac/vamsas/objects/utils/AppDataReference.java
+++ b/src/uk/ac/vamsas/objects/utils/AppDataReference.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/utils/DocumentStuff.java b/src/uk/ac/vamsas/objects/utils/DocumentStuff.java
index 14d764d..b87d346 100644
--- a/src/uk/ac/vamsas/objects/utils/DocumentStuff.java
+++ b/src/uk/ac/vamsas/objects/utils/DocumentStuff.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/utils/Format.java b/src/uk/ac/vamsas/objects/utils/Format.java
index f67f698..d746d52 100644
--- a/src/uk/ac/vamsas/objects/utils/Format.java
+++ b/src/uk/ac/vamsas/objects/utils/Format.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/utils/GlyphDictionary.java b/src/uk/ac/vamsas/objects/utils/GlyphDictionary.java
index 02a128e..7a01488 100644
--- a/src/uk/ac/vamsas/objects/utils/GlyphDictionary.java
+++ b/src/uk/ac/vamsas/objects/utils/GlyphDictionary.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/utils/MapList.java b/src/uk/ac/vamsas/objects/utils/MapList.java
index 30970e7..3c3526c 100644
--- a/src/uk/ac/vamsas/objects/utils/MapList.java
+++ b/src/uk/ac/vamsas/objects/utils/MapList.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/utils/Mapping.java b/src/uk/ac/vamsas/objects/utils/Mapping.java
index 5f987ae..db37915 100644
--- a/src/uk/ac/vamsas/objects/utils/Mapping.java
+++ b/src/uk/ac/vamsas/objects/utils/Mapping.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/utils/Properties.java b/src/uk/ac/vamsas/objects/utils/Properties.java
index 039096e..1e37767 100644
--- a/src/uk/ac/vamsas/objects/utils/Properties.java
+++ b/src/uk/ac/vamsas/objects/utils/Properties.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/utils/ProvenanceStuff.java b/src/uk/ac/vamsas/objects/utils/ProvenanceStuff.java
index d6a7d6d..cc77361 100644
--- a/src/uk/ac/vamsas/objects/utils/ProvenanceStuff.java
+++ b/src/uk/ac/vamsas/objects/utils/ProvenanceStuff.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/utils/Range.java b/src/uk/ac/vamsas/objects/utils/Range.java
index ca7a3a0..fb596c1 100644
--- a/src/uk/ac/vamsas/objects/utils/Range.java
+++ b/src/uk/ac/vamsas/objects/utils/Range.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/utils/Seq.java b/src/uk/ac/vamsas/objects/utils/Seq.java
index 538d658..2e092bd 100644
--- a/src/uk/ac/vamsas/objects/utils/Seq.java
+++ b/src/uk/ac/vamsas/objects/utils/Seq.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/utils/SeqAln.java b/src/uk/ac/vamsas/objects/utils/SeqAln.java
index 92e8068..245c1d9 100644
--- a/src/uk/ac/vamsas/objects/utils/SeqAln.java
+++ b/src/uk/ac/vamsas/objects/utils/SeqAln.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/utils/SeqSet.java b/src/uk/ac/vamsas/objects/utils/SeqSet.java
index b6f48ad..7ebf2df 100644
--- a/src/uk/ac/vamsas/objects/utils/SeqSet.java
+++ b/src/uk/ac/vamsas/objects/utils/SeqSet.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/utils/SymbolDictionary.java b/src/uk/ac/vamsas/objects/utils/SymbolDictionary.java
index 6cd81a8..acd778e 100644
--- a/src/uk/ac/vamsas/objects/utils/SymbolDictionary.java
+++ b/src/uk/ac/vamsas/objects/utils/SymbolDictionary.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/utils/Trees.java b/src/uk/ac/vamsas/objects/utils/Trees.java
index dbea136..eaa7058 100644
--- a/src/uk/ac/vamsas/objects/utils/Trees.java
+++ b/src/uk/ac/vamsas/objects/utils/Trees.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/utils/document/VersionEntries.java b/src/uk/ac/vamsas/objects/utils/document/VersionEntries.java
index b8bd785..025da3b 100644
--- a/src/uk/ac/vamsas/objects/utils/document/VersionEntries.java
+++ b/src/uk/ac/vamsas/objects/utils/document/VersionEntries.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/utils/trees/BinaryNode.java b/src/uk/ac/vamsas/objects/utils/trees/BinaryNode.java
index 5cf8664..fbad756 100644
--- a/src/uk/ac/vamsas/objects/utils/trees/BinaryNode.java
+++ b/src/uk/ac/vamsas/objects/utils/trees/BinaryNode.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/utils/trees/NewickFile.java b/src/uk/ac/vamsas/objects/utils/trees/NewickFile.java
index d38c99a..e0e136f 100644
--- a/src/uk/ac/vamsas/objects/utils/trees/NewickFile.java
+++ b/src/uk/ac/vamsas/objects/utils/trees/NewickFile.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/objects/utils/trees/SequenceNode.java b/src/uk/ac/vamsas/objects/utils/trees/SequenceNode.java
index 88cf944..1df3ccb 100644
--- a/src/uk/ac/vamsas/objects/utils/trees/SequenceNode.java
+++ b/src/uk/ac/vamsas/objects/utils/trees/SequenceNode.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/test/ExampleApplication.java b/src/uk/ac/vamsas/test/ExampleApplication.java
index 6ebfcec..0a9eeef 100644
--- a/src/uk/ac/vamsas/test/ExampleApplication.java
+++ b/src/uk/ac/vamsas/test/ExampleApplication.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/test/document/SAXTreeViewer.java b/src/uk/ac/vamsas/test/document/SAXTreeViewer.java
index 59c2313..cd49081 100644
--- a/src/uk/ac/vamsas/test/document/SAXTreeViewer.java
+++ b/src/uk/ac/vamsas/test/document/SAXTreeViewer.java
@@ -1,3 +1,24 @@
+/*
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ *  Andrew Waterhouse and Dominik Lindner.
+ * 
+ * Earlier versions have also been incorporated into Jalview version 2.4 
+ * since 2008, and TOPALi version 2 since 2007.
+ * 
+ * The Vamsas Client is free software: you can redistribute it and/or modify
+ * it under the terms of the GNU Lesser General Public License as published by
+ * the Free Software Foundation, either version 3 of the License, or
+ * (at your option) any later version.
+ *  
+ * The Vamsas Client is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU Lesser General Public License for more details.
+ * 
+ * You should have received a copy of the GNU Lesser General Public License
+ * along with the Vamsas Client.  If not, see <http://www.gnu.org/licenses/>.
+ */
 package uk.ac.vamsas.test.document;
 
 
@@ -598,4 +619,4 @@ public void fatalError(SAXParseException exception)
                           exception.getMessage());        
     throw new SAXException("Fatal Error encountered");
 }
-}
\ No newline at end of file
+}
diff --git a/src/uk/ac/vamsas/test/objects/Core.java b/src/uk/ac/vamsas/test/objects/Core.java
index 6dce168..83444a7 100644
--- a/src/uk/ac/vamsas/test/objects/Core.java
+++ b/src/uk/ac/vamsas/test/objects/Core.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/test/simpleclient/ArchiveClient.java b/src/uk/ac/vamsas/test/simpleclient/ArchiveClient.java
index fa3c700..50a12cf 100644
--- a/src/uk/ac/vamsas/test/simpleclient/ArchiveClient.java
+++ b/src/uk/ac/vamsas/test/simpleclient/ArchiveClient.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/test/simpleclient/ArchiveReader.java b/src/uk/ac/vamsas/test/simpleclient/ArchiveReader.java
index a00be72..bb0c069 100644
--- a/src/uk/ac/vamsas/test/simpleclient/ArchiveReader.java
+++ b/src/uk/ac/vamsas/test/simpleclient/ArchiveReader.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/test/simpleclient/ArchiveReports.java b/src/uk/ac/vamsas/test/simpleclient/ArchiveReports.java
index 83989af..d1ad9e5 100644
--- a/src/uk/ac/vamsas/test/simpleclient/ArchiveReports.java
+++ b/src/uk/ac/vamsas/test/simpleclient/ArchiveReports.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/test/simpleclient/ArchiveStreamReader.java b/src/uk/ac/vamsas/test/simpleclient/ArchiveStreamReader.java
index ff96afc..f876eaa 100644
--- a/src/uk/ac/vamsas/test/simpleclient/ArchiveStreamReader.java
+++ b/src/uk/ac/vamsas/test/simpleclient/ArchiveStreamReader.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/test/simpleclient/ArchiveWatcher.java b/src/uk/ac/vamsas/test/simpleclient/ArchiveWatcher.java
index e0d2f9f..0a462bd 100644
--- a/src/uk/ac/vamsas/test/simpleclient/ArchiveWatcher.java
+++ b/src/uk/ac/vamsas/test/simpleclient/ArchiveWatcher.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/test/simpleclient/ArchiveWriter.java b/src/uk/ac/vamsas/test/simpleclient/ArchiveWriter.java
index de56816..afd37dc 100644
--- a/src/uk/ac/vamsas/test/simpleclient/ArchiveWriter.java
+++ b/src/uk/ac/vamsas/test/simpleclient/ArchiveWriter.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/test/simpleclient/ClientDoc.java b/src/uk/ac/vamsas/test/simpleclient/ClientDoc.java
index 0772cb3..34034df 100644
--- a/src/uk/ac/vamsas/test/simpleclient/ClientDoc.java
+++ b/src/uk/ac/vamsas/test/simpleclient/ClientDoc.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/test/simpleclient/ClientsFileTest.java b/src/uk/ac/vamsas/test/simpleclient/ClientsFileTest.java
index edbd855..c77fdb7 100644
--- a/src/uk/ac/vamsas/test/simpleclient/ClientsFileTest.java
+++ b/src/uk/ac/vamsas/test/simpleclient/ClientsFileTest.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/test/simpleclient/CommandProcessor.java b/src/uk/ac/vamsas/test/simpleclient/CommandProcessor.java
index 48d0904..ea03629 100644
--- a/src/uk/ac/vamsas/test/simpleclient/CommandProcessor.java
+++ b/src/uk/ac/vamsas/test/simpleclient/CommandProcessor.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/test/simpleclient/TestSessionURN.java b/src/uk/ac/vamsas/test/simpleclient/TestSessionURN.java
index b7434d3..266bad9 100644
--- a/src/uk/ac/vamsas/test/simpleclient/TestSessionURN.java
+++ b/src/uk/ac/vamsas/test/simpleclient/TestSessionURN.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/test/simpleclient/VamsasArchive.java b/src/uk/ac/vamsas/test/simpleclient/VamsasArchive.java
index fe83f66..3d78cb8 100644
--- a/src/uk/ac/vamsas/test/simpleclient/VamsasArchive.java
+++ b/src/uk/ac/vamsas/test/simpleclient/VamsasArchive.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/test/simpleclient/ZipTest.java b/src/uk/ac/vamsas/test/simpleclient/ZipTest.java
index 847d8fb..fc7ad02 100644
--- a/src/uk/ac/vamsas/test/simpleclient/ZipTest.java
+++ b/src/uk/ac/vamsas/test/simpleclient/ZipTest.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/test/simpleclient/simpleapp/VamsasClient.java b/src/uk/ac/vamsas/test/simpleclient/simpleapp/VamsasClient.java
index 67db315..47af798 100644
--- a/src/uk/ac/vamsas/test/simpleclient/simpleapp/VamsasClient.java
+++ b/src/uk/ac/vamsas/test/simpleclient/simpleapp/VamsasClient.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4 
diff --git a/src/uk/ac/vamsas/test/simpleclient/simpleapp/VamsasDatastore.java b/src/uk/ac/vamsas/test/simpleclient/simpleapp/VamsasDatastore.java
index c14598c..f5245f3 100644
--- a/src/uk/ac/vamsas/test/simpleclient/simpleapp/VamsasDatastore.java
+++ b/src/uk/ac/vamsas/test/simpleclient/simpleapp/VamsasDatastore.java
@@ -1,6 +1,6 @@
 /*
- * This file is part of the Vamsas Client version 0.1. 
- * Copyright 2009 by Jim Procter, Iain Milne, Pierre Marguerite, 
+ * This file is part of the Vamsas Client version 0.2. 
+ * Copyright 2010 by Jim Procter, Iain Milne, Pierre Marguerite, 
  *  Andrew Waterhouse and Dominik Lindner.
  * 
  * Earlier versions have also been incorporated into Jalview version 2.4