From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 17 Mar 2005 10:40:18 +0000 (+0000)
Subject: takes into account fullid display
X-Git-Tag: Release_2_0~580
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=1f1e0597991c794dbc9aeccdf574ce9d3bef2360;p=jalview.git

takes into account fullid display
---

diff --git a/src/jalview/io/HTMLOutput.java b/src/jalview/io/HTMLOutput.java
index af894e0..a6ab087 100755
--- a/src/jalview/io/HTMLOutput.java
+++ b/src/jalview/io/HTMLOutput.java
@@ -90,7 +90,11 @@ public class HTMLOutput
     {
       seq = alignment.getSequenceAt(i);
       groups = alignment.findAllGroups( seq );
-      out.println("<tr><td nowrap>"+seq.getDisplayId()+"&nbsp;&nbsp;</td>");
+      if(av.getShowFullId())
+        out.println("<tr><td nowrap>"+seq.getDisplayId()+"&nbsp;&nbsp;</td>");
+      else
+        out.println("<tr><td nowrap>"+seq.getName()+"&nbsp;&nbsp;</td>");
+
 
 
       for (int res = 0; res < seq.getLength(); res++)
@@ -172,7 +176,10 @@ public class HTMLOutput
          out.println("<tr>");
          seq = al.getSequenceAt(s);
          groups = al.findAllGroups( seq );
-         out.println("<td nowrap>"+seq.getDisplayId()+"&nbsp;&nbsp;</td>");
+         if(av.getShowFullId())
+           out.println("<td nowrap>"+seq.getDisplayId()+"&nbsp;&nbsp;</td>");
+         else
+           out.println("<td nowrap>"+seq.getName()+"&nbsp;&nbsp;</td>");
 
          for (int res = startRes; res < endRes; res++)
               {