From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Thu, 7 Mar 2019 12:57:28 +0000 (+0000)
Subject: JAL-2717 JAL-2360 belated unit tests for ColourMenuHelper
X-Git-Tag: Release_2_11_0~17^2~57
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=2118127751e6cc5450b6bda3cc8329b286d3bae8;p=jalview.git

JAL-2717 JAL-2360 belated unit tests for ColourMenuHelper
---

diff --git a/test/jalview/gui/ColourMenuHelperTest.java b/test/jalview/gui/ColourMenuHelperTest.java
new file mode 100644
index 0000000..9d4ed6c
--- /dev/null
+++ b/test/jalview/gui/ColourMenuHelperTest.java
@@ -0,0 +1,263 @@
+package jalview.gui;
+
+import static org.testng.Assert.assertEquals;
+import static org.testng.Assert.assertFalse;
+import static org.testng.Assert.assertSame;
+import static org.testng.Assert.assertTrue;
+
+import jalview.bin.Cache;
+import jalview.datamodel.Alignment;
+import jalview.datamodel.AlignmentI;
+import jalview.datamodel.Sequence;
+import jalview.datamodel.SequenceI;
+import jalview.schemes.ClustalxColourScheme;
+import jalview.schemes.ColourSchemeI;
+import jalview.schemes.ColourSchemes;
+import jalview.schemes.NucleotideColourScheme;
+import jalview.schemes.PIDColourScheme;
+import jalview.schemes.ResidueColourScheme;
+import jalview.util.MessageManager;
+
+import java.util.Enumeration;
+import java.util.Iterator;
+
+import javax.swing.AbstractButton;
+import javax.swing.ButtonGroup;
+import javax.swing.JMenu;
+import javax.swing.JMenuItem;
+
+import org.testng.annotations.BeforeClass;
+import org.testng.annotations.Test;
+
+public class ColourMenuHelperTest
+{
+  /**
+   * Use a properties file with a user-defined colour scheme
+   */
+  @BeforeClass
+  public void setUp()
+  {
+    Cache.loadProperties("test/jalview/io/testProps.jvprops");
+  }
+
+  @Test
+  public void testAddMenuItems_peptide()
+  {
+    SequenceI s1 = new Sequence("s1", "KFRQSILM");
+    AlignmentI al = new Alignment(new SequenceI[] { s1 });
+    JMenu menu = new JMenu();
+
+    ButtonGroup bg = ColourMenuHelper.addMenuItems(menu, null, al, false);
+    Enumeration<AbstractButton> bgElements = bg.getElements();
+
+    /*
+     * first entry is 'No Colour' option
+     */
+    JMenuItem item = menu.getItem(0);
+    assertEquals(item.getName(), ResidueColourScheme.NONE);
+    assertEquals(item.getText(), MessageManager.getString("label.none"));
+    AbstractButton bgItem = bgElements.nextElement();
+    assertSame(bgItem, item);
+
+    /*
+     * check that each registered colour scheme is in the menu,
+     * and in the button group;
+     * nucleotide-only schemes should be disabled menu items
+     */
+    Iterator<ColourSchemeI> colourSchemes = ColourSchemes.getInstance()
+            .getColourSchemes().iterator();
+    final int items = menu.getItemCount();
+    for (int i = 1; i < items; i++)
+    {
+      item = menu.getItem(i);
+      bgItem = bgElements.nextElement();
+      assertSame(bgItem, item);
+      ColourSchemeI cs = colourSchemes.next();
+      String name = cs.getSchemeName();
+      assertEquals(item.getName(), name);
+      boolean enabled = item.isEnabled();
+      assertEquals(enabled, cs.isApplicableTo(al));
+      if (cs instanceof NucleotideColourScheme) // nucleotide only
+      {
+        assertFalse(enabled);
+      }
+      if (cs instanceof ClustalxColourScheme) // peptide only
+      {
+        assertTrue(enabled);
+      }
+      if (cs instanceof PIDColourScheme) // nucleotide or peptide
+      {
+        assertTrue(enabled);
+      }
+
+      /*
+       * check i18n for display name
+       */
+      String label = MessageManager.getStringOrReturn("label.colourScheme_",
+              name.toLowerCase().replace(" ", "_"));
+      assertEquals(item.getText(), label);
+    }
+
+    /*
+     * check nothing left over
+     */
+    assertFalse(colourSchemes.hasNext());
+    assertFalse(bgElements.hasMoreElements());
+  }
+
+  @Test
+  public void testAddMenuItems_nucleotide()
+  {
+    SequenceI s1 = new Sequence("s1", "GAATAATCCATAACAG");
+    AlignmentI al = new Alignment(new SequenceI[] { s1 });
+    JMenu menu = new JMenu();
+    AlignFrame af = new AlignFrame(al, 500, 500);
+
+    /*
+     * menu for SequenceGroup excludes 'User Defined Colour'
+     */
+    PopupMenu popup = new PopupMenu(af.alignPanel, s1, null);
+    ButtonGroup bg = ColourMenuHelper.addMenuItems(menu, popup, al, false);
+    Enumeration<AbstractButton> bgElements = bg.getElements();
+  
+    /*
+     * first entry is 'No Colour' option
+     */
+    JMenuItem item = menu.getItem(0);
+    assertEquals(item.getName(), ResidueColourScheme.NONE);
+    assertEquals(item.getText(), MessageManager.getString("label.none"));
+    AbstractButton bgItem = bgElements.nextElement();
+    assertSame(bgItem, item);
+  
+    /*
+     * check that each registered colour scheme is in the menu,
+     * and in the button group;
+     * nucleotide-only schemes should be disabled menu items
+     */
+    Iterator<ColourSchemeI> colourSchemes = ColourSchemes.getInstance()
+            .getColourSchemes().iterator();
+    final int items = menu.getItemCount();
+    for (int i = 1; i < items; i++)
+    {
+      item = menu.getItem(i);
+      bgItem = bgElements.nextElement();
+      assertSame(bgItem, item);
+      ColourSchemeI cs = colourSchemes.next();
+      String name = cs.getSchemeName();
+      assertEquals(item.getName(), name);
+      boolean enabled = item.isEnabled();
+      assertEquals(enabled, cs.isApplicableTo(al));
+      if (cs instanceof NucleotideColourScheme) // nucleotide only
+      {
+        assertTrue(enabled);
+      }
+      if (cs instanceof ClustalxColourScheme) // peptide only
+      {
+        assertFalse(enabled);
+      }
+      if (cs instanceof PIDColourScheme) // nucleotide or peptide
+      {
+        assertTrue(enabled);
+      }
+  
+      /*
+       * check i18n for display name
+       */
+      String label = MessageManager.getStringOrReturn("label.colourScheme_",
+              name.toLowerCase().replace(" ", "_"));
+      assertEquals(item.getText(), label);
+    }
+  
+    /*
+     * check nothing left over
+     */
+    assertFalse(colourSchemes.hasNext());
+    assertFalse(bgElements.hasMoreElements());
+  }
+
+  /**
+   * 'Simple only' mode constructs colour menu for structures
+   * <ul>
+   * <li>no 'No Colour' option</li>
+   * <li>only simple colour schemes (colour per residue)</li>
+   * </ul>
+   */
+  @Test
+  public void testAddMenuItems_simpleOnly()
+  {
+    SequenceI s1 = new Sequence("s1", "KFRQSILM");
+    AlignmentI al = new Alignment(new SequenceI[] { s1 });
+    JMenu menu = new JMenu();
+  
+    ButtonGroup bg = ColourMenuHelper.addMenuItems(menu, null, al, true);
+    Enumeration<AbstractButton> bgElements = bg.getElements();
+  
+    /*
+     * check that only 'simple' colour schemes are included
+     */
+    Iterator<ColourSchemeI> colourSchemes = ColourSchemes.getInstance()
+            .getColourSchemes().iterator();
+    int i = 0;
+    while (colourSchemes.hasNext())
+    {
+      ColourSchemeI cs = colourSchemes.next();
+      if (!cs.isSimple())
+      {
+        continue;
+      }
+      JMenuItem item = menu.getItem(i++);
+      AbstractButton bgItem = bgElements.nextElement();
+      assertSame(bgItem, item);
+    }
+  
+    /*
+     * check nothing left over
+     */
+    assertEquals(i, menu.getItemCount());
+    assertFalse(bgElements.hasMoreElements());
+  }
+
+  /*
+   * menu for AlignFrame includes 'User Defined Colour'
+   */
+  @Test
+  public void testAddMenuItems_forAlignFrame()
+  {
+    SequenceI s1 = new Sequence("s1", "KFRQSILM");
+    AlignmentI al = new Alignment(new SequenceI[] { s1 });
+    AlignFrame af = new AlignFrame(al, 500, 500);
+    JMenu menu = new JMenu();
+  
+    ButtonGroup bg = ColourMenuHelper.addMenuItems(menu, af, al, false);
+    Enumeration<AbstractButton> bgElements = bg.getElements();
+  
+    /*
+     * check that each registered colour scheme is in the menu,
+     * (skipping over No Colour which is the first menu item),
+     * and in the button group
+     */
+    bgElements.nextElement(); // skip No Colour
+    Iterator<ColourSchemeI> colourSchemes = ColourSchemes.getInstance()
+            .getColourSchemes().iterator();
+    final int items = menu.getItemCount();
+    for (int i = 1; i < items - 1; i++)
+    {
+      JMenuItem item = menu.getItem(i);
+      AbstractButton bgItem = bgElements.nextElement();
+      assertSame(bgItem, item);
+      ColourSchemeI cs = colourSchemes.next();
+      assertEquals(item.getName(), cs.getSchemeName());
+    }
+  
+    /*
+     * check menu also has User Defined Colour
+     */
+    assertFalse(colourSchemes.hasNext());
+    JMenuItem item = menu.getItem(items - 1);
+    AbstractButton bgItem = bgElements.nextElement();
+    assertSame(bgItem, item);
+    assertEquals(item.getName(), ResidueColourScheme.USER_DEFINED_MENU);
+    assertEquals(item.getText(),
+            MessageManager.getString("action.user_defined"));
+  }
+}