From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 19 Jul 2006 10:57:43 +0000 (+0000)
Subject: Count uniprot refs
X-Git-Tag: Release_2_1~266
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=21b2c08c209b0c4eb1111dab1d81e8408c245ddd;p=jalview.git

Count uniprot refs
---

diff --git a/src/jalview/io/DasSequenceFeatureFetcher.java b/src/jalview/io/DasSequenceFeatureFetcher.java
index 20ae27c..b4dd1f6 100755
--- a/src/jalview/io/DasSequenceFeatureFetcher.java
+++ b/src/jalview/io/DasSequenceFeatureFetcher.java
@@ -83,7 +83,8 @@ public class DasSequenceFeatureFetcher implements Runnable
       DasCoordinateSystem[] coords = source.getCoordinateSystem();
       for (int c = 0; c < coords.length; c++)
       {
-        if (coords[c].getName().equalsIgnoreCase("UniProt"))
+        System.out.println(coords[c].getName());
+        if (coords[c].getName().indexOf("UniProt")>-1)
         {
           uniprotCount++;
           break;
@@ -99,9 +100,10 @@ public class DasSequenceFeatureFetcher implements Runnable
       {
         for(int j=0; j<dbref.size(); j++)
         {
-          System.out.println(dbref.elementAt(j)
+          DBRefEntry entry = (DBRefEntry)dbref.elementAt(j);
+          System.out.println(entry.getSource()
                              +" "+jalview.datamodel.DBRefSource.UNIPROT);
-          if(dbref.elementAt(j)
+          if(entry.getSource()
              .equals(jalview.datamodel.DBRefSource.UNIPROT))
           {
             System.out.println("got a match");