From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 12 Sep 2006 09:24:00 +0000 (+0000)
Subject: Add copy consensus sequence
X-Git-Tag: Release_2_1_1~4
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=21e81f77e2d15005e98574c43b9729f6ca0cb3b9;p=jalview.git

Add copy consensus sequence
---

diff --git a/help/html/menus/alwannotations.html b/help/html/menus/alwannotations.html
index d9540f9..546a94a 100755
--- a/help/html/menus/alwannotations.html
+++ b/help/html/menus/alwannotations.html
@@ -24,9 +24,14 @@
         <em>Annotations can be saved to file or output to a text window in the 
         Jalview annotations format. </em> </li>
       <li><strong>Ignore Gaps in Consensus</strong><br>
-        If this checkbox is selected, all consensus calculations performed in the 
-        current Alignment window will be done without counting gaps as
-        a consensus character.</li>
+        If this checkbox is selected, all consensus calculations performed in 
+        the current Alignment window will be done without counting gaps as a consensus 
+        character.</li>
+      <li><strong>Copy Consensus Sequence</strong><br>
+        Copies the consensus sequence to the clipboard in Fasta format, to allow 
+        the consensus sequence to be added to an alignment. Note the copied sequence 
+        is not accessible to other programs if Jalview is running as an applet 
+        in a web page.</li>
     </ul>
   </li>
   <li><strong>Annotation Popup Menu<br>