From: Jim Procter Date: Thu, 10 Sep 2015 02:50:17 +0000 (+0100) Subject: JAL-736 JAL-1645 brief documentation about physicochemical property conservation... X-Git-Tag: Release_2_10_0~437 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=230f5c014bd1b6ff2838eb677556fb9403db7662;p=jalview.git JAL-736 JAL-1645 brief documentation about physicochemical property conservation tooltips --- diff --git a/help/html/calculations/conservation.html b/help/html/calculations/conservation.html index 9641a8e..cb3e785 100755 --- a/help/html/calculations/conservation.html +++ b/help/html/calculations/conservation.html @@ -44,8 +44,15 @@ is based on the one used in grouping), and columns with mutations where all properties are conserved are marked with a '+' (score of 10, indicating all properties are conserved).

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Colouring an alignment by conservation
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+ Mousing over a conservation histogram reveals a tooltip which + contains a series of symbols corresponding to the physicochemical + properties that are conserved amongst the amino acids observed at + each position. In these tooltips, the presence of ! implies + that the lack of a particular physicochemical property is conserved + (e.g. !proline). +

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Colouring an alignment by conservation
Conservation scores can be used to colour an alignment. This is explained further in the help page for conservation colouring.