From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 6 Dec 2005 09:15:56 +0000 (+0000)
Subject: Paste this makes new sequence
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=235363bbdb3c3a48d8936ee263b977dc8a085e60;p=jalview.git

Paste this makes new sequence
---

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 86d7cb6..210c44f 100755
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -828,7 +828,10 @@ public class AlignFrame
         //!newAlignment
         for (int i = 0; i < sequences.length; i++)
         {
-          viewport.alignment.addSequence(sequences[i]);
+          Sequence newseq = new Sequence(sequences[i].getName(),
+              sequences[i].getSequence(), sequences[i].getStart(),
+              sequences[i].getEnd());
+          viewport.alignment.addSequence(newseq);
           if(sequences[i].getDatasetSequence()==null)
           {
              ////////////////////////////
@@ -838,10 +841,8 @@ public class AlignFrame
                                        AlignSeq.extractGaps("-. ", sequences[i].getSequence()),
                                        sequences[i].getStart(),
                                        sequences[i].getEnd());
-            sequences[i].setDatasetSequence(ds);
+            newseq.setDatasetSequence(ds);
             viewport.alignment.getDataset().addSequence(ds);
-
-
           }
 
         }