From: tva <tva@10.205.251.175>
Date: Fri, 28 Jun 2019 13:20:37 +0000 (+0100)
Subject: JAL-3336 add better method of determining where data table begins
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=24514ffaa8ef17fa371dcdd64a4693282d0e93d6;p=jalview.git

JAL-3336 add better method of determining where data table begins
---

diff --git a/src/jalview/hmmer/HMMSearch.java b/src/jalview/hmmer/HMMSearch.java
index 1506c0f..57786e5 100644
--- a/src/jalview/hmmer/HMMSearch.java
+++ b/src/jalview/hmmer/HMMSearch.java
@@ -470,10 +470,11 @@ public class HMMSearch extends HmmerCommand
     {
       line = br.readLine();
     }
-    for (int i = 0; i < 6; i++)
+    while (!line.contains("-------"))
     {
       line = br.readLine();
     }
+    line = br.readLine();
 
     int index = 0;
     while (!"  ------ inclusion threshold ------".equals(line)