From: jprocter <Jim Procter>
Date: Thu, 5 May 2011 13:40:20 +0000 (+0000)
Subject: added simple stdout debug function
X-Git-Tag: Release_2_7~197
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=245a1b805629bedf7a0d66aecb26de6bc220b991;p=jalview.git

added simple stdout debug function
---

diff --git a/src/jalview/structure/StructureSelectionManager.java b/src/jalview/structure/StructureSelectionManager.java
index 492907b..502c68e 100644
--- a/src/jalview/structure/StructureSelectionManager.java
+++ b/src/jalview/structure/StructureSelectionManager.java
@@ -30,6 +30,21 @@ public class StructureSelectionManager
 
   StructureMapping[] mappings;
 
+  /**
+   * debug function - write all mappings to stdout
+   */
+  public void reportMapping() {
+    if (mappings==null)
+    {
+      System.err.println("reportMapping: No PDB/Sequence mappings.");
+    }else{
+      System.err.println("reportMapping: There are "+mappings.length+" mappings.");
+      for (int m=0;m<mappings.length;m++)
+      {
+        System.err.println("mapping "+m+" : "+mappings[m].pdbfile);
+      }
+    }
+  }
   Hashtable mappingData = new Hashtable();
 
   public static StructureSelectionManager getStructureSelectionManager()