From: Jim Procter Date: Tue, 28 Jan 2014 12:08:51 +0000 (+0000) Subject: Merge branch 'JAL-1400_sandboxapp' into JAL-957_jbake X-Git-Tag: Release_2_8_0b1~1^2~13^2~1 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=24bfd552cdb398a12f436d0ec44760d059e8adb2;hp=-c;p=jalview.git Merge branch 'JAL-1400_sandboxapp' into JAL-957_jbake --- 24bfd552cdb398a12f436d0ec44760d059e8adb2 diff --combined examples/appletParameters.html index 8fe4766,0a8061f..7479729 --- a/examples/appletParameters.html +++ b/examples/appletParameters.html @@@ -1,168 -1,167 +1,169 @@@ - + - + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8) + * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + --> -Applet Parameters + Applet Parameters + - - - - - + + + + + - + - - - + + + - - - - + +
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Quick Links:

  • Download the applet jar file from here
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  • As of Jalview 2.8b1, the applet is signed, with 'sandbox' permissions
  • Parameters are described below
  • The javascript API is described here
    • @@@ -486,6 -485,9 +487,9 @@@ <param name="embedded" value="true">
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**APPLET SECURITY WARNINGS**

  • Since January 2014, only signed applets are allowed to run in the web page by default. We provide a range of different signed version of JalviewLite and JmolApplet that can be used in various situations.
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  • The default version of JalviewLite is signed for sandbox execution.
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**NEW FEATURES** in Jalview 2.8

  • Normalised sequence logo display @@@ -591,14 -593,8 +595,14 @@@ new line in an alignment file must be entered as a parameter)
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