From: Jim Procter Date: Mon, 1 Dec 2014 15:38:26 +0000 (+0000) Subject: file for JAL-1268 jalview.io.Jalview2xmlTests.testTCoffeeScores X-Git-Tag: Jalview_2_9~135^2 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=263d87f485673ab9e1b6e1b50229a282c2c85671;p=jalview.git file for JAL-1268 jalview.io.Jalview2xmlTests.testTCoffeeScores --- diff --git a/examples/uniref50.score_ascii b/examples/uniref50.score_ascii new file mode 100644 index 0000000..4a506d9 --- /dev/null +++ b/examples/uniref50.score_ascii @@ -0,0 +1,99 @@ +T-COFFEE, Version_8.99(Fri Feb 18 08:27:45 CET 2011 - Revision 596) +Cedric Notredame +CPU TIME:0 sec. +SCORE=94 +* + BAD AVG GOOD +* +FER_CAPAA : 99 +FER_CAPAN : 94 +FER1_SOLLC : 94 +Q93XJ9_SOLTU : 93 +FER1_PEA : 93 +Q7XA98_TRIPR : 92 +FER1_MESCR : 92 +FER1_SPIOL : 92 +FER3_RAPSA : 99 +FER1_ARATH : 93 +FER_BRANA : 99 +FER2_ARATH : 93 +Q93Z60_ARATH : 92 +FER1_MAIZE : 91 +O80429_MAIZE : 91 +cons : 94 + +FER_CAPAA ------------------------------------------------ +FER_CAPAN 99------333445778888876665554-23333345--6778765- +FER1_SOLLC 98------344556788888876665544-23333344--5677765- +Q93XJ9_SOLTU 98------344556788888876555554-23333344--5677765- +FER1_PEA 9964---1344556788888876655544-23333344--6778876- +Q7XA98_TRIPR 9964---1344566788888876665554-222222210056777650 +FER1_MESCR 9954--1124455677878765--22222122233345--5677776- +FER1_SPIOL 9965--111111--677777765444444233334445--6789876- +FER3_RAPSA ------------------------------------------------ +FER1_ARATH 9965----344556888888876665554233333344--6788776- +FER_BRANA ------------------------------------------------ +FER2_ARATH 9965----344556888888876665555233333345--6778876- +Q93Z60_ARATH 9965----344556888888876665555233333345--6778876- +FER1_MAIZE 99540001222334677777765555443--2222233--4567554- +O80429_MAIZE 9854---------23445555---11111111111111--1212222- +cons 996400012344557778887766544441222233340056777650 + + +FER_CAPAA -----------9999999999999999999999999999999999999 +FER_CAPAN 4--445678999999999999999999999999999999999999999 +FER1_SOLLC 4--445678999999999999999999999999999999999999999 +Q93XJ9_SOLTU 4--445678999999999999999999999999999999999999999 +FER1_PEA 533444568999999999999999999999999999999999999999 +Q7XA98_TRIPR 333434568999999999999999999999999999999999999999 +FER1_MESCR 4333-5678999999999999999999999999999999999999999 +FER1_SPIOL 422--2334599999999999999999999999999999999999999 +FER3_RAPSA -----------9999999999999999999999999999999999999 +FER1_ARATH 533446788999999999999999999999999999999999999999 +FER_BRANA -----------9999999999999999999999999999999999999 +FER2_ARATH 533546788999999999999999999999999999999999999999 +Q93Z60_ARATH 533546788999999999999999999999999999999999999999 +FER1_MAIZE 4222--567899999999999999999999999999999999999999 +O80429_MAIZE 222435678999999999999999999999999999999999999999 +cons 422445677899999999999999999999999999999999999999 + + +FER_CAPAA 999999999999999999999999999999999999999999999999 +FER_CAPAN 999999999999999999999999999999999999999999999999 +FER1_SOLLC 999999999999999999999999999999999999999999999999 +Q93XJ9_SOLTU 999999999999999999999999999999999999999999999999 +FER1_PEA 999999999999999999999999999999999999999999999999 +Q7XA98_TRIPR 999999999999999999999999999999999999999999999999 +FER1_MESCR 999999999999999999999999999999999999999999999999 +FER1_SPIOL 999999999999999999999999999999999999999999999999 +FER3_RAPSA 999999999999999999999999999999999999999999999999 +FER1_ARATH 999999999999999999999999999999999999999999999999 +FER_BRANA 999999999999999999999999999999999999999999999999 +FER2_ARATH 999999999999999999999999999999999999999999999999 +Q93Z60_ARATH 99999999999999999999999999999------------------- +FER1_MAIZE 999999999999999999999999999999999999999999999999 +O80429_MAIZE 999999999999999999999999999999999999999999999999 +cons 999999999999999999999999999999999999999999999999 + + +FER_CAPAA 999999998865- +FER_CAPAN 999999998865- +FER1_SOLLC 999999998865- +Q93XJ9_SOLTU 999999998865- +FER1_PEA 999999999865- +Q7XA98_TRIPR 999999998865- +FER1_MESCR 999999998865- +FER1_SPIOL 999999998865- +FER3_RAPSA 99999999874-- +FER1_ARATH 99999998874-- +FER_BRANA 99999999874-- +FER2_ARATH 99999998764-- +Q93Z60_ARATH ------------- +FER1_MAIZE 9999999998620 +O80429_MAIZE 99999999874-- +cons 9999999987550 + + + + +