From: James Procter <j.procter@dundee.ac.uk>
Date: Tue, 16 Jan 2024 17:28:40 +0000 (+0000)
Subject: JAL-4366 JAL-728 show 3di-Mat based quality in the overview when gecos-3di is enabled
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=275d46dc7593039fd82f32b87c1103552937a737;hp=bc1a3842b31a35a7794f4afec4911ad421c7c3e4;p=jalview.git

JAL-4366 JAL-728 show 3di-Mat based quality in the overview when gecos-3di is enabled
---

diff --git a/src/jalview/gui/OverviewCanvas.java b/src/jalview/gui/OverviewCanvas.java
index 0827208..5b08f21 100644
--- a/src/jalview/gui/OverviewCanvas.java
+++ b/src/jalview/gui/OverviewCanvas.java
@@ -173,7 +173,7 @@ public class OverviewCanvas extends JPanel
     if (showAnnotation)
     {
       mg.translate(0, od.getSequencesHeight());
-      or.drawGraph(mg, av.getAlignmentConservationAnnotation(),
+      or.drawGraph(mg, av.is3di() ? av.getAlignmentQualityAnnot() : av.getAlignmentConservationAnnotation(),
               od.getGraphHeight(), od.getColumns(av.getAlignment()));
       mg.translate(0, -od.getSequencesHeight());
     }