From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Tue, 22 May 2012 11:33:19 +0000 (+0100)
Subject: JAL-1065,JAL-1066 propagated notification of colourscheme when alignment changed... 
X-Git-Tag: Jalview_2_9~522
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=2863477bc61bf5a8aa04279ed8be27fd2b66ca9f;p=jalview.git

JAL-1065,JAL-1066 propagated notification of colourscheme when alignment changed to refactored code (SHA:677878508a8006cbf7e94e4d4e129ddcf3e3f2c2)
---

diff --git a/src/jalview/viewmodel/AlignmentViewport.java b/src/jalview/viewmodel/AlignmentViewport.java
index 703e9a7..ae1a4fd 100644
--- a/src/jalview/viewmodel/AlignmentViewport.java
+++ b/src/jalview/viewmodel/AlignmentViewport.java
@@ -1058,6 +1058,8 @@ public abstract class AlignmentViewport implements AlignViewportI
     ColourSchemeI cs = globalColourScheme;
     if (cs != null)
     {
+      cs.alignmentChanged(alignment);
+      // TODO: fold all recalc events for clustalX into alignmentChanged
       if (cs instanceof ClustalxColourScheme)
       {
         ((ClustalxColourScheme) cs).resetClustalX(alignment.getSequences(),