From: jprocter <Jim Procter>
Date: Tue, 24 Apr 2007 14:34:08 +0000 (+0000)
Subject: bugfix for sequence features mapped to multiple contigs on local sequence frame
X-Git-Tag: Release_2_3~183
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=28d35d0ae99f30943e0cf07815f8ba0a2ec08cd3;p=jalview.git

bugfix for sequence features mapped to multiple contigs on local sequence frame
---

diff --git a/src/jalview/datamodel/Mapping.java b/src/jalview/datamodel/Mapping.java
index 705cb15..2594c31 100644
--- a/src/jalview/datamodel/Mapping.java
+++ b/src/jalview/datamodel/Mapping.java
@@ -172,7 +172,7 @@ public class Mapping {
       if (map!=null) {
         int[] frange = map.locateInFrom(f.getBegin(), f.getEnd());
         SequenceFeature[] vf = new SequenceFeature[frange.length/2];
-        for (int i=0,v=0;i<frange.length;i+=2) {
+        for (int i=0,v=0;i<frange.length;i+=2,v++) {
           vf[v] = new SequenceFeature(f);
           vf[v].setBegin(frange[i]);
           vf[v].setEnd(frange[i+1]);