From: Jim Procter <jprocter@issues.jalview.org>
Date: Mon, 15 May 2017 15:56:06 +0000 (+0100)
Subject: JAL-2507 case insensitive recognition of annotation type
X-Git-Tag: Release_2_10_2~3^2~88^2~2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=29797e41803852bb0f848f7ae95fb4ff978bfe5f;p=jalview.git

JAL-2507 case insensitive recognition of annotation type
---

diff --git a/src/jalview/io/StockholmFile.java b/src/jalview/io/StockholmFile.java
index 7f3f93b..ed50db8 100644
--- a/src/jalview/io/StockholmFile.java
+++ b/src/jalview/io/StockholmFile.java
@@ -820,7 +820,7 @@ public class StockholmFile extends AlignFile
     }
     boolean ss = false, posterior = false;
     type = id2type(type);
-    if (type.equals("secondary structure"))
+    if (type.equalsIgnoreCase("secondary structure"))
     {
       ss = true;
     }
@@ -1200,7 +1200,7 @@ public class StockholmFile extends AlignFile
     while (e.hasMoreElements())
     {
       Object ll = e.nextElement();
-      if (typeIds.get(ll).toString().equals(type))
+      if (typeIds.get(ll).toString().equalsIgnoreCase(type))
       {
         key = (String) ll;
         break;