From: pvtroshin Date: Wed, 24 Nov 2010 13:12:35 +0000 (+0000) Subject: Dundee specific settings from JWS2 branch X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=2a2a8850288820f9059fd071eba4bb50b4b3fb3c;p=jabaws.git Dundee specific settings from JWS2 branch git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@3384 e3abac25-378b-4346-85de-24260fe3988d --- diff --git a/dundee-conf/settings/ClustalLimits.xml b/dundee-conf/settings/ClustalLimits.xml index ebbe206..28adf27 100644 --- a/dundee-conf/settings/ClustalLimits.xml +++ b/dundee-conf/settings/ClustalLimits.xml @@ -12,7 +12,7 @@ # LocalEngineExecutionLimit # - 40 + 30 500 diff --git a/dundee-conf/settings/MafftLimits.xml b/dundee-conf/settings/MafftLimits.xml index 7db541e..4cd787f 100644 --- a/dundee-conf/settings/MafftLimits.xml +++ b/dundee-conf/settings/MafftLimits.xml @@ -6,8 +6,38 @@ 1000 + L-INS-i (Accuracy-oriented) + 500 + 1000 + + + G-INS-i (Accuracy-oriented) + 500 + 1000 + + + E-INS-i (Accuracy-oriented) + 500 + 1000 + + + FFT-NS-i (Speed oriented) + 2000 + 1000 + + + FFT-NS-1 (Speed oriented) + 2000 + 1000 + + + NW-NS-PartTree-1 (Speed oriented) + 2000 + 1000 + + # LocalEngineExecutionLimit # - 40 + 20 500 diff --git a/dundee-conf/settings/MuscleLimits.xml b/dundee-conf/settings/MuscleLimits.xml index 88cfc61..75d66d9 100644 --- a/dundee-conf/settings/MuscleLimits.xml +++ b/dundee-conf/settings/MuscleLimits.xml @@ -6,8 +6,23 @@ 1000 + Protein alignment(Fastest speed) + 2000 + 1000 + + + Nucleotide alignment(Fastest speed) + 1000 + 3000 + + + Huge alignments (speed-oriented) + 2000 + 3000 + + # LocalEngineExecutionLimit # - 40 + 20 500 diff --git a/dundee-conf/settings/ProbconsLimits.xml b/dundee-conf/settings/ProbconsLimits.xml index 96c8b31..e530fb9 100644 --- a/dundee-conf/settings/ProbconsLimits.xml +++ b/dundee-conf/settings/ProbconsLimits.xml @@ -7,7 +7,7 @@ # LocalEngineExecutionLimit # - 30 + 20 500 diff --git a/dundee-conf/settings/TcoffeeLimits.xml b/dundee-conf/settings/TcoffeeLimits.xml index f21fb03..84b3f50 100644 --- a/dundee-conf/settings/TcoffeeLimits.xml +++ b/dundee-conf/settings/TcoffeeLimits.xml @@ -6,8 +6,14 @@ 1000 + Quick align. Very fast approximate (Speed-oriented) + 1000 + 3000 + + # LocalEngineExecutionLimit # - 40 - 500 + 15 + 400 +