From: Jim Procter <jprocter@issues.jalview.org>
Date: Thu, 26 Oct 2017 10:40:25 +0000 (+0100)
Subject: JAL-2685 tidy up html doc
X-Git-Tag: Release_2_10_3b1~64
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=2a33b8a1423861f21081cfc7edb1794c6da8b751;p=jalview.git

JAL-2685 tidy up html doc
---

diff --git a/help/html/calculations/pairwise.html b/help/html/calculations/pairwise.html
index bf677e6..1090253 100755
--- a/help/html/calculations/pairwise.html
+++ b/help/html/calculations/pairwise.html
@@ -38,15 +38,21 @@
   <p>
     Gap open : 12 <br> Gap extend : 2
   </p>
-  <p>When you select the pairwise alignment option, a new window will
-    come up which displays the alignments in a text format, for example:</p>
-  <p style="font-family:'Lucida Console', monospace">
-    <pre>
-    FER1_SPIOL/5-13 TTMMGMAT<br/>
-                    |. .. ||<br/>
+  <p>When you select the pairwise alignment option, a new window
+    will come up which displays the alignments in a text format, for
+    example:</p>
+  <p>
+  <pre>
+    FER1_SPIOL/5-13 TTMMGMAT<br />
+                    |. .. ||<br />
     FER1_MESCR/5-15 TAALSGAT
-    </pre>shows the aligned sequences, where '|' links identical residues, and (for peptide) '.' links residues that have a positive PAM250 score.
-  <p>The window also shows information about the alignment such as alignment score, length and percentage identity between the sequences.</p>
-  <p>A button is also provided to allow you to view the sequences as an alignment.</p>
+    </pre>
+  shows the aligned sequences, where '|' links identical residues, and
+  (for peptide) '.' links residues that have a positive PAM250 score.
+  <p>The window also shows information about the alignment such as
+    alignment score, length and percentage identity between the
+    sequences.</p>
+  <p>A button is also provided to allow you to view the sequences as
+    an alignment.</p>
 </body>
 </html>