From: Jim Procter <jprocter@issues.jalview.org>
Date: Mon, 27 Jul 2020 14:05:30 +0000 (+0100)
Subject: JAL-3696 log the error message from the exception to the console
X-Git-Tag: Develop-2_11_2_0-d20201215~24^2~24
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=2a8c9feeb8e20147a503b7419972edc22a383cb1;p=jalview.git

JAL-3696 log the error message from the exception to the console
---

diff --git a/src/jalview/io/vcf/VCFLoader.java b/src/jalview/io/vcf/VCFLoader.java
index 1eeb922..f4ffc0c 100644
--- a/src/jalview/io/vcf/VCFLoader.java
+++ b/src/jalview/io/vcf/VCFLoader.java
@@ -912,7 +912,7 @@ public class VCFLoader
          * RuntimeException throwable by htsjdk
          */
         String msg = String.format("Error reading VCF for %s:%d-%d: %s ",
-                map.chromosome, vcfStart, vcfEnd);
+                map.chromosome, vcfStart, vcfEnd,e.getLocalizedMessage());
         Cache.log.error(msg);
       }
     }