From: tcofoegbu <tcnofoegbu@dundee.ac.uk>
Date: Tue, 9 May 2017 11:11:30 +0000 (+0100)
Subject: JAL-2465 fix to dynamically specify data source type in StructureSelectionManager... 
X-Git-Tag: Release_2_10_2~3^2~57^2~8
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=2b6e44202b11e12526e0301e7ae16f069220fab3;p=jalview.git

JAL-2465 fix to dynamically specify data source type in StructureSelectionManager.setMapping(...) method
---

diff --git a/src/jalview/structure/StructureSelectionManager.java b/src/jalview/structure/StructureSelectionManager.java
index b993be2..0e98921 100644
--- a/src/jalview/structure/StructureSelectionManager.java
+++ b/src/jalview/structure/StructureSelectionManager.java
@@ -35,6 +35,7 @@ import jalview.datamodel.SearchResultsI;
 import jalview.datamodel.SequenceI;
 import jalview.ext.jmol.JmolParser;
 import jalview.gui.IProgressIndicator;
+import jalview.io.AppletFormatAdapter;
 import jalview.io.DataSourceType;
 import jalview.io.StructureFile;
 import jalview.util.MappingUtils;
@@ -384,6 +385,7 @@ public class StructureSelectionManager
     boolean isMapUsingSIFTs = SiftsSettings.isMapWithSifts();
     try
     {
+      sourceType = AppletFormatAdapter.checkProtocol(pdbFile);
       pdb = new JmolParser(pdbFile, sourceType);
 
       if (pdb.getId() != null && pdb.getId().trim().length() > 0