From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 25 May 2005 17:46:17 +0000 (+0000)
Subject: reset colours added
X-Git-Tag: Release_2_0~177
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=2ba9716bbffe4b35f640f8a85be4b60fe5fb2fdd;p=jalview.git

reset colours added
---

diff --git a/src/jalview/schemes/ClustalxColourScheme.java b/src/jalview/schemes/ClustalxColourScheme.java
index c6b63dd..fe1289e 100755
--- a/src/jalview/schemes/ClustalxColourScheme.java
+++ b/src/jalview/schemes/ClustalxColourScheme.java
@@ -45,11 +45,15 @@ public class ClustalxColourScheme extends ResidueColourScheme
     }
   Vector colourTable = new Vector();
 
-
   public ClustalxColourScheme(Vector seqs, int maxWidth)
   {
+    resetClustalX(seqs, maxWidth);
+  }
+
+  public void resetClustalX(Vector seqs, int maxWidth)
+  {
     cons2 = new int[maxWidth][24];
-    int start = 0, end = maxWidth-1;
+    int start = 0;
 
     // Initialize the array
     for (int j=0;j<24;j++)
@@ -220,11 +224,6 @@ public class ClustalxColourScheme extends ResidueColourScheme
     return Color.pink;
   }
 
- public void setGroupSizeChanged(int i)
- {
-   size = i;
- }
-
   public Color findColour(String s, int j)
    {
      if( threshold!=0 && !aboveThreshold(s,j))