From: Jim Procter <jprocter@issues.jalview.org>
Date: Tue, 26 Apr 2016 15:53:34 +0000 (+0100)
Subject: JAL-2079 allow prefix+<XFAMID>+suffix type URL signature
X-Git-Tag: Release_2_10_0~235^2~11
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=2bca29574b68d32c16a80b2c1bfa330ed6012f82;p=jalview.git

JAL-2079 allow prefix+<XFAMID>+suffix type URL signature
---

diff --git a/src/jalview/ws/dbsources/Xfam.java b/src/jalview/ws/dbsources/Xfam.java
index 26c9997..b70beff 100644
--- a/src/jalview/ws/dbsources/Xfam.java
+++ b/src/jalview/ws/dbsources/Xfam.java
@@ -55,7 +55,9 @@ public abstract class Xfam extends DbSourceProxyImpl
     startQuery();
     // TODO: trap HTTP 404 exceptions and return null
     AlignmentI rcds = new FormatAdapter().readFile(getXFAMURL()
-            + queries.trim().toUpperCase(), FormatAdapter.URL, "STH");
+            + queries.trim().toUpperCase() + getXFAMURLSUFFIX(),
+            jalview.io.FormatAdapter.URL,
+            "STH");
     for (int s = 0, sNum = rcds.getHeight(); s < sNum; s++)
     {
       rcds.getSequenceAt(s).addDBRef(new DBRefEntry(getXfamSource(),
@@ -81,4 +83,13 @@ public abstract class Xfam extends DbSourceProxyImpl
     return true;
   }
 
+   * default suffix to append the retrieval URL for this source.
+   * 
+   * @return "" for most Xfam sources
+   */
+  public String getXFAMURLSUFFIX()
+  {
+    return "";
+  }
+
 }