From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 13 Apr 2005 16:36:18 +0000 (+0000)
Subject: getTree method added
X-Git-Tag: Release_2_0~432
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=2bce008bf6a7cdd574baa767acef76939ea1aff8;p=jalview.git

getTree method added
---

diff --git a/src/jalview/gui/TreePanel.java b/src/jalview/gui/TreePanel.java
index eb0123f..9f9e327 100755
--- a/src/jalview/gui/TreePanel.java
+++ b/src/jalview/gui/TreePanel.java
@@ -29,6 +29,10 @@ public class TreePanel extends GTreePanel
   TreeCanvas treeCanvas;
   NJTree tree;
 
+  public NJTree getTree()
+  {
+    return tree;
+  }
 
   public TreePanel(AlignViewport av, Vector seqVector, String type, String pwtype, int s, int e)
   {
@@ -50,7 +54,6 @@ public class TreePanel extends GTreePanel
     }
 
     tree = new NJTree(seq, type, pwtype, start, end);
-    av.setCurrentTree(tree);
 
     treeCanvas = new TreeCanvas(av, tree, scrollPane, longestName);
 
@@ -80,8 +83,6 @@ public class TreePanel extends GTreePanel
       }
       // This constructor matches sequence names to treenodes and sets up the tree layouts.
       tree = new NJTree(seq, newtree);
-      av.setCurrentTree(tree);
-
 
       tree.reCount(tree.getTopNode());
       tree.findHeight(tree.getTopNode());