From: jprocter Date: Sun, 11 Nov 2012 11:23:11 +0000 (+0000) Subject: tidy help X-Git-Tag: Release_2_8~2^2 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=2c0245a6e119e7a995691cbf35944ae5741b181c;p=jalview.git tidy help --- diff --git a/help/html/releases.html b/help/html/releases.html index c77547b..2d51647 100755 --- a/help/html/releases.html +++ b/help/html/releases.html @@ -39,337 +39,155 @@ Application
  • Support for JABAWS 2.0 Services (AACon alignment - conservation, protein disorder and Clustal Omega) - - -
    • -
  • - JABAWS - server status indicator in Web Services preferences -
    • -
  • - VARNA - (http://varna.lri.fr) viewer for RNA structures in Jalview - alignment window -
    • -
  • - Updated - jalview build and deploy framework for OSX mountain lion, windows - 7, and 8 + conservation, protein disorder and Clustal Omega)
    • +
  • JABAWS server status indicator in Web Services preferences
    • +
  • VARNA (http://varna.lri.fr) viewer for RNA structures in + Jalview alignment window
    • +
  • Updated Jalview build and deploy framework for OSX mountain + lion, windows 7, and 8
  • Nucleotide substitution matrix for PCA that supports RNA - and ambiguity codes -
    • + and ambiguity codes
  • Improved sequence database retrieval GUI
    • -
  • Support fetching and database reference look up against - multiple DAS sources (Fetch all from in 'fetch db refs') -
    • +
  • Support fetching and database reference look up against + multiple DAS sources (Fetch all from in 'fetch db refs')
  • Jalview project improvements
    • -
  • - horizontal - scrolling gesture support -
    • -
  • Visual progress indicator when PCA calculation is running -
    • -
  • Simpler JABA web services menus -
    • -
  • - visual - indication that web service results are still being retrieved from - server -
    • -
  • - Serialise - the dialogs that are shown when jalview starts up for first time -
    • -
  • - Jalview - user agent string for interacting with HTTP services -
    • -
  • - DAS - 1.6 and DAS 2.0 source support using new JDAS client library -
    • -
  • - Examples - directory and Groovy library included in InstallAnywhere - distribution -
    • +
  • horizontal scrolling gesture support
    • +
  • Visual progress indicator when PCA calculation is running
    • +
  • Simpler JABA web services menus
    • +
  • visual indication that web service results are still being + retrieved from server
    • +
  • Serialise the dialogs that are shown when Jalview starts up + for first time
    • +
  • Jalview user agent string for interacting with HTTP + services
    • +
  • DAS 1.6 and DAS 2.0 source support using new JDAS client + library
    • +
  • Examples directory and Groovy library included in + InstallAnywhere distribution
    • Applet General Documentation and Development Application Applet General @@ -386,13 +204,13 @@ specify which alignment a multi-structure view takes its colours/correspondences from
  • Allow properties file location to be specified as URL
    • -
  • Extend jalview project to preserve associations between +
  • Extend Jalview project to preserve associations between many alignment views and a single Jmol display
    • -
  • Store annotation row height in jalview project file
    • +
  • Store annotation row height in Jalview project file
  • Annotation row column label formatting attributes stored in project file
  • Annotation row order for auto-calculated annotation rows - preserved in jalview project file
    • + preserved in Jalview project file
  • Visual progress indication when Jalview state is saved using Desktop window menu
  • Visual indication that command line arguments are still @@ -417,7 +235,7 @@
  • Drag to reorder annotation rows in annotation panel
  • 'automaticScrolling' parameter
  • Allow sequences with partial ID string matches to be - annotated from GFF/jalview features files
    • + annotated from GFF/Jalview features files
  • Sequence logo annotation row in applet
  • Absolute paths relative to host server in applet parameters are treated as such
    • @@ -437,7 +255,7 @@
  • sortBy method
  • Set of applet and application examples shipped with documentation
    • -
  • New example to demonstrate jalviewLite and Jmol +
  • New example to demonstrate JalviewLite and Jmol javascript message exchange
    • General @@ -446,7 +264,7 @@ multiple alignments
  • Option to automatically sort alignment with new tree
  • User configurable link to enable redirects to a - www.jalview.org mirror
    • + www.Jalview.org mirror
  • Jmol colours option for Jmol displays
  • Configurable newline string when writing alignment and other flat files
    • @@ -461,8 +279,8 @@
  • Restructured javascript and applet api documentation
  • Ant target to publish example html files with applet archive
    • -
  • Netbeans project for building jalview from source
    • -
  • ant task to create online javadoc for jalview source
    • +
  • Netbeans project for building Jalview from source
    • +
  • ant task to create online javadoc for Jalview source
    • Application