From: pvtroshin <pvtroshin@e3abac25-378b-4346-85de-24260fe3988d>
Date: Wed, 27 Apr 2011 23:39:38 +0000 (+0000)
Subject: A wee improvement
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=2c9b93f44b1837859552b14ab82d265ec7959d1b;hp=b52b03d3fd8606731fa620350a389ee7dc37d9e9;p=jabaws.git

A wee improvement

git-svn-id: link to svn.lifesci.dundee.ac.uk/svn/barton/ptroshin/JABA2@4044 e3abac25-378b-4346-85de-24260fe3988d
---

diff --git a/datamodel/compbio/data/sequence/FastaReader.java b/datamodel/compbio/data/sequence/FastaReader.java
index dd09acd..ed91e93 100644
--- a/datamodel/compbio/data/sequence/FastaReader.java
+++ b/datamodel/compbio/data/sequence/FastaReader.java
@@ -147,12 +147,12 @@ public class FastaReader implements Iterator<FastaSequence> {
 		}
 		String header = sc.next();
 		// Get rid of the new line chars (should cover common cases)
-		header = header.replaceAll("\n", "").replaceAll("\r", "");
+		header = header.replaceAll("\r", "");
 
 		sc.useDelimiter("\\s*");
 		final StringBuilder sb = new StringBuilder();
 		while (sc.hasNext()) {
-			sb.append(sc.next().trim());
+			sb.append(sc.next());
 		}
 		final String sequence = sb.toString();
 		if (Util.isEmpty(sequence)) {