From: Jim Procter <j.procter@dundee.ac.uk>
Date: Thu, 15 Sep 2022 17:57:20 +0000 (+0100)
Subject: JAL-4061 JAL-4062 documentation and button labels.. will need revising !
X-Git-Tag: Release_2_11_4_0~519^2~2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=2c9c077f3255a55e8a217a57069af44ae8c258c9;p=jalview.git

JAL-4061 JAL-4062 documentation and button labels.. will need revising !
---

diff --git a/help/help/html/features/search.html b/help/help/html/features/search.html
index 837d7b3..d559db8 100755
--- a/help/help/html/features/search.html
+++ b/help/help/html/features/search.html
@@ -38,8 +38,8 @@ td {
     selecting &quot;Find...&quot; from the &quot;Search&quot; menu.</p>
   <img src="search.png" width="400" height="152">
   <p>&quot;Find next&quot; will find the next occurrence of the
-    specified and adjust the alignment window view to show it, and
-    &quot;Find all&quot; highlights all matches for a pattern. The
+    query and adjust the alignment window view to show it, and
+    &quot;Find all&quot; highlights all matches for a query. The
     &quot;New Feature&quot; is a quick way to highlight and group
     residues matching the specified search pattern throughout the
     alignment.
@@ -49,9 +49,9 @@ td {
     <li>Gaps are ignored when matching the query to the sequences
       in the alignment.</li>
     <li>Hidden columns can optionally be ignored (<em>since Jalview 2.11</em>)</li>
-    <li>The search is applied to both sequences and their IDs, and
-      optionally also to the description string (<em>since Jalview
-        2.10</em>)
+    <li>The search is applied to both sequences and their IDs. It can
+      optionally also be applied to the description string (<em>since Jalview
+        2.10</em>), and sequence feature descriptions (<em>since Jalview 2.11.2.5</em>).
     </li>
     <li>If a region is selected, then search will <strong>only</strong>
       be performed on that region.<br />
@@ -84,6 +84,12 @@ td {
     highlighted region.
   </p>
   <p>
+  <strong>Copying highlighted regions to a new alignment</strong>
+  </p>
+  <p>
+    You can copy the currently highlighted matching regions of sequences to the clipboard with alt-Command-C.    
+  </p>
+  <p>
 
     <strong>A quick Regular Expression Guide</strong>
   </p>
diff --git a/resources/lang/Messages.properties b/resources/lang/Messages.properties
index 3843ddb..3554d50 100644
--- a/resources/lang/Messages.properties
+++ b/resources/lang/Messages.properties
@@ -1398,6 +1398,8 @@ label.click_to_edit = Click to edit, right-click for menu
 label.by_annotation_tooltip = Annotation Colour is configured from the main Colour menu
 label.show_linked_features = Show {0} features
 label.on_top = on top
+label.include_features = Include Features
+label.search_features = Search descriptions of displayed features
 label.include_linked_features = Include {0} features
 label.include_linked_tooltip = Include visible {0} features<br>converted to local sequence coordinates
 label.features_not_shown = {0} feature(s) not shown
@@ -1406,6 +1408,7 @@ label.ignore_hidden = Ignore hidden columns
 label.ignore_hidden_tooltip = Ignore any characters in hidden columns when matching
 label.log_level = Log level
 label.log_level_tooltip = Temporarily set the log level for this console. The log level will revert to {0} when this Java console is closed.
+label.copy = Copy
 label.copy_to_clipboard = Copy to clipboard
 label.copy_to_clipboard_tooltip = Copy all of the log text in this console to the system clipboard
 label.startup = Startup