From: jprocter Jalview can create sequence features from the matches of a regular expression search, or from the currently
+selected area via the "selection→Create
+sequence feature" entry in the selection area popup menu. In both
+cases, the Create Features dialog box will then be
+opened: Select or enter the attributes for the features being created,
+and then press OK to create the new features. Each attribute is described below:
+ Either give the new features a new name or use the menu to
+ re-use an existing feature name. Enter a new group name, or re-use an existing group from the
+ pull-down menu. Keep the existing colour for this feature's name and group, or
+ select the colour box to open a colour chooser to pick a different one. Enter a description for all the features being created. Each
+ feature defined on a sequence may have its own description that will be
+ displayed in the tooltip for the feature in that region.
+
+
Sequence Feature Creation was introduced in Jalview Version 2.2
+ + \ No newline at end of file diff --git a/help/html/features/crnewfeature.gif b/help/html/features/crnewfeature.gif new file mode 100644 index 0000000..5aa6edb Binary files /dev/null and b/help/html/features/crnewfeature.gif differ diff --git a/help/html/features/editingFeatures.html b/help/html/features/editingFeatures.html index c30c55f..e8fd6f5 100644 --- a/help/html/features/editingFeatures.html +++ b/help/html/features/editingFeatures.html @@ -1,13 +1,26 @@ -Double clicking on a sequence feature opens the "Amend/Delete Features" dialog box. - -
- +Amending or Deleting Sequence Features +Double clicking a position in the alignment with one or more +displayed sequence features opens the "Amend/Delete +Features" dialog box.
+ +The dialog box only allows one of the features at the +double-clicked position to be edited or deleted at a time, and it will +also be highlighted in black in the alignment window.
+Choose which feature is to be modified by selecting it from the Sequence +Feature Name pull down +menu. In addition to the Name, group, colour and description attributes +described for the new feature dialog +box, a feature's start and end position can be changed either by +entering a new position directly or by using the adjacent up and down +buttons.
+Select Amend to update the feature, Delete +to remove the selected feature, or Cancel to leave the +feature unchanged.
Sequence feature editing was implemented in Jalview 2.2
- \ No newline at end of file +