From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 13 Jan 2005 18:06:55 +0000 (+0000)
Subject: FindAllGroups added
X-Git-Tag: Release_2_0~774
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=2cf0e6316cf8b4e545bad1648966b02fad49017f;p=jalview.git

FindAllGroups added
---

diff --git a/src/jalview/datamodel/Alignment.java b/src/jalview/datamodel/Alignment.java
index f480f0f..dd02bc1 100755
--- a/src/jalview/datamodel/Alignment.java
+++ b/src/jalview/datamodel/Alignment.java
@@ -318,6 +318,24 @@ public class Alignment implements AlignmentI
 
     }
     return null;
+  }
+
+  public SequenceGroup [] findAllGroups(SequenceI s)
+  {
+
+    ArrayList temp = new ArrayList();
+
+    for (int i = 0; i < this.groups.size();i++)
+    {
+      SequenceGroup sg = (SequenceGroup)groups.elementAt(i);
+      if (sg.sequences.contains(s))
+       temp.add(sg);
+    }
+
+    SequenceGroup [] ret = new SequenceGroup[temp.size()];
+    temp.toArray( ret );
+
+    return ret;
 
   }
   /**    */
diff --git a/src/jalview/datamodel/AlignmentI.java b/src/jalview/datamodel/AlignmentI.java
index 10c8ae1..660a4fa 100755
--- a/src/jalview/datamodel/AlignmentI.java
+++ b/src/jalview/datamodel/AlignmentI.java
@@ -44,6 +44,7 @@ public interface AlignmentI {
   // Grouping methods
   public SequenceGroup findGroup(int i) ;
   public SequenceGroup findGroup(SequenceI s) ;
+  public SequenceGroup [] findAllGroups(SequenceI s);
   public void          addToGroup(SequenceGroup g, SequenceI s) ;
   public void          removeFromGroup(SequenceGroup g,SequenceI s) ;
   public void          addGroup(SequenceGroup sg) ;