From: Jim Procter <jprocter@compbio.dundee.ac.uk>
Date: Tue, 28 Jan 2014 21:23:28 +0000 (+0000)
Subject: JAL-957 reinstate the PDBfile parameter
X-Git-Tag: Release_2_8_0b1~1^2~9^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=2d194c0fb039def421fae69cb997fe88080b0df7;p=jalview.git

JAL-957 reinstate the PDBfile parameter
---

diff --git a/examples-jbake/templates/macros.ftl b/examples-jbake/templates/macros.ftl
index 47d031b..2a24008 100644
--- a/examples-jbake/templates/macros.ftl
+++ b/examples-jbake/templates/macros.ftl
@@ -1,4 +1,4 @@
-<#assign appparams = [ "file","features","treeFile","userDefinedColour","sortByTree","showSequenceLogo","showGroupConsensus","showFullId","linkLabel_1","linkUrl_1","linkUrl_2","linkLabel_2","windowHeight","windowWidth","showFeatureSettings","wrap","showAnnotation","defaultColour","embedded", "debug" ] />
+<#assign appparams = [ "file","features","treeFile","userDefinedColour","sortByTree","showSequenceLogo","showGroupConsensus","showFullId","linkLabel_1","linkUrl_1","linkUrl_2","linkLabel_2","windowHeight","windowWidth","showFeatureSettings","wrap","showAnnotation","defaultColour","embedded", "debug", "PDBfile" ] />
 
 
 <#macro jvlitebutton appjar params prots=true width=140 height=35>
diff --git a/examples/applets.html b/examples/applets.html
index de31d6b..05a50ae 100755
--- a/examples/applets.html
+++ b/examples/applets.html
@@ -248,6 +248,7 @@ Try out JalviewLite by pressing one of the buttons below.<br/>
 <param name="wrap" value="true"/>
 <param name="showAnnotation" value="false"/>
 <param name="defaultColour" value="Strand Propensity"/>
+<param name="PDBfile" value="1gaq.txt FER1_MAIZE"/>
    <param name="linkLabel_1" value="Uniprot"/>
    <param name="linkUrl_1"
      value="http://www.uniprot.org/uniprot/$SEQUENCE_ID$"/>
diff --git a/examples/u_applets.html b/examples/u_applets.html
index 76e41d8..f49c38a 100644
--- a/examples/u_applets.html
+++ b/examples/u_applets.html
@@ -245,6 +245,7 @@ Try out JalviewLite by pressing one of the buttons below.<br/>
 <param name="wrap" value="true"/>
 <param name="showAnnotation" value="false"/>
 <param name="defaultColour" value="Strand Propensity"/>
+<param name="PDBfile" value="1gaq.txt FER1_MAIZE"/>
    <param name="linkLabel_1" value="Uniprot"/>
    <param name="linkUrl_1"
      value="http://www.uniprot.org/uniprot/$SEQUENCE_ID$"/>