From: jprocter <Jim Procter> Date: Thu, 4 Nov 2010 15:05:13 +0000 (+0000) Subject: optional dialog to report any problematic web service URLs ( JAL-343 ) X-Git-Tag: Release_2_7~396 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=2f994a474b8fa42697d1ed15f5cf894f353adcba;p=jalview.git optional dialog to report any problematic web service URLs ( JAL-343 ) --- diff --git a/help/html/webServices/index.html b/help/html/webServices/index.html index 25a5bef..a12d7b3 100755 --- a/help/html/webServices/index.html +++ b/help/html/webServices/index.html @@ -44,20 +44,22 @@ bioinformatic data retrieval and analysis. <li>Services for submitting IDs and sequences to external bioinformatics services such as <a href="#envision2">Envision2</a>.</li> <li>Programs for multiple sequence alignment, made available <em>via</em> - <a href="JABAWS.html">Java Bioinformatic - Analysis Web Service (JABAWS)</a> servers.</li> + <a href="JABAWS.html">Java Bioinformatic Analysis Web Service + (JABAWS)</a> servers.</li> </ul> The <a href="webServicesPrefs.html">Web Services Preference panel</a> controls the display and appearance of the submission and analysis services in the <strong>Web Services</strong> menu.</li> - + <li>If Jalview encounters problems accessing any services, it may + display a <a href="webServicesPrefs.html#wswarnings">warning dialog + box</a> (this can be turned off using the web services preferences tab).</li> </ul> </p> -<p>Jalview's distributed computations are SOAP based services -exposing protein sequence alignment and secondary structure prediction -programs. These services actually run on the cluster based in the School -of Life Sciences, University of Dundee, and are maintained by the Barton -group.</p> +<p><strong>More about Jalview's Web Services</strong> <br> +Jalview's distributed computations are SOAP based services exposing +protein sequence alignment and secondary structure prediction programs. +These services actually run on the cluster based in the School of Life +Sciences, University of Dundee, and are maintained by the Barton group.</p> <p><strong><a name="envision2">Envision2 Services</a></strong></p> <p>Since version 2.5, Jalview has included a client to enable the user to submit one or more sequences or sequence IDs to analysis diff --git a/help/html/webServices/invalidurldialog.gif b/help/html/webServices/invalidurldialog.gif new file mode 100644 index 0000000..acd6ce7 Binary files /dev/null and b/help/html/webServices/invalidurldialog.gif differ diff --git a/help/html/webServices/webServicesPrefs.html b/help/html/webServices/webServicesPrefs.html index 9a8a388..a581761 100644 --- a/help/html/webServices/webServicesPrefs.html +++ b/help/html/webServices/webServicesPrefs.html @@ -56,5 +56,24 @@ define the layout of the menus provided for JABAWS services by sorting them into submenus according to analysis type and/or host server.</p> <p><em>The web services preferences panel was added in Jalview 2.6</em></p> +<p><strong><a name="wswarnings">Web Services Invalid +URL warnings</a></strong><br> +Jalview may inform you of any problems contacting the web services by +showing a dialog box like the one below:<br> +<center><img src="invalidurldialog.gif" align="center" + alt="Web Services Invalid URL Warning dialog box" width="389" + height="258"><br> +Web Services Invalid URL Warning dialog box</center> +<br> +<strong><em>Note:</em></strong> this warning will be shown if you are running the Jalview desktop +without any network connection, or if you have configured +<a href="JABAWS.html">JABA services</a> +which cannot be accessed from your location. Should you wish to disable +these warnings, then uncheck the +<em>Display warnings</em> +check box in the web services preferences. +</p> +<p><em>The web services warnings dialog box was added in +Jalview 2.6.1</em></p> </body> </html> diff --git a/help/html/webServices/wsprefs.gif b/help/html/webServices/wsprefs.gif index 96b9a5a..d53dd59 100644 Binary files a/help/html/webServices/wsprefs.gif and b/help/html/webServices/wsprefs.gif differ