From: Jim Procter <jprocter@dundee.ac.uk>
Date: Sun, 27 Apr 2014 17:38:13 +0000 (+0100)
Subject: JAL-1164 (regression) reinstate 'apply disorder prediction to selection' functionalit... 
X-Git-Tag: Jalview_2_9~194^2~1
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=30578786c1cddee4911a62ec3fbd4fbb292e8ec0;p=jalview.git

JAL-1164 (regression) reinstate 'apply disorder prediction to selection' functionality in 2.8.1+ lost during JabaCalcWorker refactoring
---

diff --git a/src/jalview/ws/jws2/JabawsCalcWorker.java b/src/jalview/ws/jws2/JabawsCalcWorker.java
index 8515dbc..f585732 100644
--- a/src/jalview/ws/jws2/JabawsCalcWorker.java
+++ b/src/jalview/ws/jws2/JabawsCalcWorker.java
@@ -379,7 +379,7 @@ public abstract class JabawsCalcWorker extends AlignCalcWorker
     end=inputSeqs.getEndRes();
     
 
-    for (SequenceI sq : ((List<SequenceI>) alignment.getSequences()))
+    for (SequenceI sq : ((List<SequenceI>) inputSeqs.getSequences()))
     {
       if (bySequence ? sq.findPosition(end+1) -sq.findPosition(start+1) > minlen - 1 : sq.getEnd() - sq.getStart() > minlen - 1)
       {