From: Jim Procter <j.procter@dundee.ac.uk>
Date: Thu, 20 Oct 2022 15:29:03 +0000 (+0100)
Subject: JAL-2349 JAL-3855 adapt renderer for AlignmentI.getContactList(..) mapping to sequenc... 
X-Git-Tag: Release_2_11_4_0~529
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=306825ab43e7e4232a913f304f6d18b532213b83;p=jalview.git

JAL-2349 JAL-3855 adapt renderer for AlignmentI.getContactList(..) mapping to sequence associated reference frame
---

diff --git a/src/jalview/renderer/ContactMapRenderer.java b/src/jalview/renderer/ContactMapRenderer.java
index 29ee22e..b302060 100644
--- a/src/jalview/renderer/ContactMapRenderer.java
+++ b/src/jalview/renderer/ContactMapRenderer.java
@@ -67,11 +67,6 @@ public class ContactMapRenderer implements AnnotationRowRendererI
         x++;
         continue;
       }
-      if (_aa.sequenceRef != null)
-      {
-        // get the sequence position for the column
-        column = _aa.sequenceRef.findPosition(column) - 1;
-      }
       ContactListI contacts = viewport.getContactList(_aa, column);
       if (contacts == null)
       {