From: amwaterhouse <Andrew Waterhouse>
Date: Fri, 2 Sep 2005 08:29:13 +0000 (+0000)
Subject: Applet search by residue index fixed
X-Git-Tag: Release_2_05b~66
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=3112465bf6d322e99d79b98c0641ea10ff36656f;p=jalview.git

Applet search by residue index fixed
---

diff --git a/src/jalview/appletgui/Finder.java b/src/jalview/appletgui/Finder.java
index e152506..06fc9e1 100755
--- a/src/jalview/appletgui/Finder.java
+++ b/src/jalview/appletgui/Finder.java
@@ -144,18 +144,18 @@ public class Finder
       int res = Integer.parseInt(searchString);
       found = true;
 
-      if (av.getSelectionGroup().getSize() > 0)
+      if (av.getSelectionGroup() == null || av.getSelectionGroup().getSize() < 1)
       {
-        seq = (Sequence) (av.getSelectionGroup().getSequenceAt(0));
+        seq = (Sequence) av.getAlignment().getSequenceAt(0);
       }
       else
       {
-        seq = (Sequence) av.getAlignment().getSequenceAt(0);
+        seq = (Sequence) (av.getSelectionGroup().getSequenceAt(0));
       }
 
       searchResults.addElement(Integer.toString(av.getAlignment().findIndex(seq)));
-      searchResults.addElement(Integer.toString(seq.findIndex(res) - 1));
-      searchResults.addElement(Integer.toString(seq.findIndex(res) - 1));
+      searchResults.addElement(String.valueOf(res));
+      searchResults.addElement(String.valueOf(res));
 
     }
     catch (NumberFormatException ex)