From: TZVanaalten <TZVanaalten@LS30916.ad.lifesci.dundee.ac.uk>
Date: Fri, 25 Aug 2017 13:54:17 +0000 (+0100)
Subject: JAL-2629 hmm annotation consensus characters are now upper case
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=3188a29183ee5acaad2f5ab9d6c88a1bfd758f61;p=jalview.git

JAL-2629 hmm annotation consensus characters are now upper case
---

diff --git a/src/jalview/analysis/AAFrequency.java b/src/jalview/analysis/AAFrequency.java
index 219794b..72b3d00 100755
--- a/src/jalview/analysis/AAFrequency.java
+++ b/src/jalview/analysis/AAFrequency.java
@@ -418,7 +418,8 @@ public class AAFrequency
 
       String description = value + " bits";
       information.annotations[i] = new Annotation(
-              Character.toString(hmm.getConsensusAtAlignColumn(i)),
+              Character.toString(Character
+                      .toUpperCase(hmm.getConsensusAtAlignColumn(i))),
               description, ' ', value);
     }
     information.graphMax = max;