From: Sasha Sherstnev <a.sherstnev@dundee.ac.uk>
Date: Fri, 10 Jan 2014 14:59:59 +0000 (+0000)
Subject: Dummy controller for proteomes
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=327ae45bb41935947a918061771c27f7ac1ac7bd;p=proteocache.git

Dummy controller for proteomes
---

diff --git a/server/compbio/controllers/ProteomeController.java b/server/compbio/controllers/ProteomeController.java
new file mode 100644
index 0000000..5974493
--- /dev/null
+++ b/server/compbio/controllers/ProteomeController.java
@@ -0,0 +1,92 @@
+package compbio.controllers;
+
+import java.util.Map;
+
+import org.springframework.stereotype.Controller;
+import org.springframework.web.bind.annotation.RequestMapping;
+import org.springframework.web.bind.annotation.RequestMethod;
+import org.springframework.web.bind.annotation.RequestParam;
+
+import compbio.statistic.CassandraRequester;
+
+/**
+ * Spring controller for dealing with proteomes. This version works in the
+ * servlet style.
+ * 
+ * @author Alexander Sherstnev
+ * @author Natasha Sherstneva
+ * 
+ * @since 0.5
+ * @version 1.0 December 2014
+ */
+@Controller
+@RequestMapping("/proteomes")
+public class ProteomeController extends BasicController {
+
+	@RequestMapping(value = "/load", method = RequestMethod.GET)
+	public String loadProteome(Map<String, Object> model) {
+		model.put("username", getPrincipalName());
+		return "support/Notimplemented";
+	}
+
+	@RequestMapping(value = "view", method = RequestMethod.GET)
+	public String viewProteome(Map<String, Object> model) {
+		model.put("username", getPrincipalName());
+		return "support/Notimplemented";
+	}
+
+	@RequestMapping(value = "launch", method = RequestMethod.GET)
+	public String launchjobProteome(Map<String, Object> model) {
+		model.put("username", getPrincipalName());
+		return "support/Notimplemented";
+	}
+
+	@RequestMapping(value = "load/result", method = RequestMethod.GET)
+	public String countSequences(@RequestParam("TypeFeatures") String typeFeature, @RequestParam("Percent") String percent,
+			Map<String, Object> model) {
+		model.put("username", getPrincipalName());
+		final long startTime = System.currentTimeMillis();
+
+		if (percent.equals("")) {
+			model.put("error", "The value must not be empty");
+			model.put("type", typeFeature);
+			model.put("value", percent);
+			return "query/SSFeatures";
+		}
+
+		int realpercent;
+		try {
+			realpercent = Integer.parseInt(percent.trim());
+		} catch (NumberFormatException e) {
+			model.put("error", "The value must be an integer number");
+			model.put("value", percent);
+			return "query/SSFeatures";
+		}
+
+		if (realpercent < 1) {
+			model.put("error", "The value must be greater than 0");
+			model.put("value", percent);
+			return "query/SSFeatures";
+		}
+
+		if (realpercent > 100) {
+			model.put("error", "The value must be less than 100");
+			model.put("value", percent);
+			return "query/SSFeatures";
+		}
+
+		CassandraRequester cr = new CassandraRequester();
+		Map<String, String> r = cr.readProteinsPrediction(typeFeature, realpercent);
+		model.put("results", r);
+		model.put("njobs", 0);
+		if (null != r) {
+			model.put("njobs", r.size());
+		}
+		final long endTime = System.currentTimeMillis();
+		model.put("timeExecution", (endTime - startTime));
+		model.put("feature", typeFeature);
+		model.put("percent", realpercent);
+		return "reportSSFeatures";
+	}
+
+}