From: James Procter Date: Mon, 22 May 2023 14:40:36 +0000 (+0100) Subject: JAL-629 javadoc on StructureSelectionManager.computeMapping X-Git-Tag: Release_2_11_3_0~14^2~3^2^2~16 X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=33b66c03f2b63cc80b6d7e697c02530209041990;p=jalview.git JAL-629 javadoc on StructureSelectionManager.computeMapping --- diff --git a/src/jalview/structure/StructureSelectionManager.java b/src/jalview/structure/StructureSelectionManager.java index 563f0e7..64c1547 100644 --- a/src/jalview/structure/StructureSelectionManager.java +++ b/src/jalview/structure/StructureSelectionManager.java @@ -388,6 +388,9 @@ public class StructureSelectionManager * @param IProgressIndicator * reference to UI component that maintains a progress bar for the * mapping operation + * @param tft - specify how to interpret the temperature factor column in the atom data + * @param paeFilename - when not null, specifies a filename containing a matrix formatted in JSON using one of the known PAE formats + * @param doXferSettings - when true, transfer annotation to mapped sequences in sequenceArray * @return null or the structure data parsed as a pdb file */ synchronized public StructureFile computeMapping(boolean forStructureView,