From: kjvdheide <kjvanderheide@dundee.ac.uk>
Date: Tue, 5 Dec 2017 10:07:27 +0000 (+0000)
Subject: JAL-2838 tree viewer interface expanded to include sorting
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=349224513625897a49a832321cf339145aa840c2;p=jalview.git

JAL-2838 tree viewer interface expanded to include sorting
---

diff --git a/src/jalview/ext/archaeopteryx/JalviewBinding.java b/src/jalview/ext/archaeopteryx/JalviewBinding.java
index b4bcd61..331e77d 100644
--- a/src/jalview/ext/archaeopteryx/JalviewBinding.java
+++ b/src/jalview/ext/archaeopteryx/JalviewBinding.java
@@ -577,16 +577,16 @@ public final class JalviewBinding
   @Override
   public void sortByTree_actionPerformed()// modify for Aptx
   {
-    //
+
     // if (treeCanvas.applyToAllViews)
     // {
     // final ArrayList<CommandI> commands = new ArrayList<>();
     // for (AlignmentPanel ap : PaintRefresher
-    // .getAssociatedPanels(av.getSequenceSetId()))
+    // .getAssociatedPanels(parentAvport.getSequenceSetId()))
     // {
     // commands.add(sortAlignmentIn(ap.av.getAlignPanel()));
     // }
-    // av.getAlignPanel().alignFrame.addHistoryItem(new CommandI()
+    // parentAvport.getAlignPanel().alignFrame.addHistoryItem(new CommandI()
     // {
     //
     // @Override
diff --git a/src/jalview/ext/treeviewer/ExternalTreeViewerBindingI.java b/src/jalview/ext/treeviewer/ExternalTreeViewerBindingI.java
index a4ec9b2..4fc267a 100644
--- a/src/jalview/ext/treeviewer/ExternalTreeViewerBindingI.java
+++ b/src/jalview/ext/treeviewer/ExternalTreeViewerBindingI.java
@@ -56,4 +56,6 @@ public interface ExternalTreeViewerBindingI<N>
 
   public void showMatchingChildSequences(N parentNode);
 
+  public void sortByTree_actionPerformed();
+
 }