From: Jim Procter <jprocter@issues.jalview.org>
Date: Tue, 26 Apr 2016 15:57:05 +0000 (+0100)
Subject: JAL-2079 update URL for RFAM and PFAM sources
X-Git-Tag: Release_2_10_0~235^2~10
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=359282f422c257c41a06f219501b219a9a1967b6;p=jalview.git

JAL-2079 update URL for RFAM and PFAM sources
---

diff --git a/src/jalview/ws/dbsources/PfamFull.java b/src/jalview/ws/dbsources/PfamFull.java
index 4f5b8f5..62b9686 100644
--- a/src/jalview/ws/dbsources/PfamFull.java
+++ b/src/jalview/ws/dbsources/PfamFull.java
@@ -40,7 +40,7 @@ public class PfamFull extends Pfam
   @Override
   protected String getXFAMURL()
   {
-    return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=full&format=stockholm&order=t&case=l&gaps=default&entry=";
+    return "http://pfam.xfam.org/family/alignment/download/format?alnType=full&format=stockholm&order=t&case=l&gaps=default&entry=";
   }
 
   /*
diff --git a/src/jalview/ws/dbsources/PfamSeed.java b/src/jalview/ws/dbsources/PfamSeed.java
index be8f044..053953c 100644
--- a/src/jalview/ws/dbsources/PfamSeed.java
+++ b/src/jalview/ws/dbsources/PfamSeed.java
@@ -42,7 +42,7 @@ public class PfamSeed extends Pfam
   @Override
   protected String getXFAMURL()
   {
-    return "http://pfam.sanger.ac.uk/family/alignment/download/format?alnType=seed&format=stockholm&order=t&case=l&gaps=default&entry=";
+    return "http://pfam.xfam.org/family/alignment/download/format?alnType=seed&format=stockholm&order=t&case=l&gaps=default&entry=";
   }
 
   /*
diff --git a/src/jalview/ws/dbsources/RfamFull.java b/src/jalview/ws/dbsources/RfamFull.java
index e1e9e9a..3053363 100644
--- a/src/jalview/ws/dbsources/RfamFull.java
+++ b/src/jalview/ws/dbsources/RfamFull.java
@@ -42,7 +42,8 @@ public class RfamFull extends Rfam
   @Override
   protected String getXFAMURL()
   {
-    return "http://rfam.sanger.ac.uk/family/alignment/download/format?alnType=full&nseLabels=0&format=stockholm&acc=";
+    return "http://rfam.xfam.org/family/alignment/download/format?alnType=full&nseLabels=0&format=stockholm&acc=";
+
   }
 
   /*
diff --git a/src/jalview/ws/dbsources/RfamSeed.java b/src/jalview/ws/dbsources/RfamSeed.java
index 2850fd5..c7851f2 100644
--- a/src/jalview/ws/dbsources/RfamSeed.java
+++ b/src/jalview/ws/dbsources/RfamSeed.java
@@ -42,7 +42,7 @@ public class RfamSeed extends Rfam
   @Override
   protected String getXFAMURL()
   {
-    return "http://rfam.sanger.ac.uk/family/alignment/download/format?alnType=seed&nseLabels=0&format=stockholm&acc=";
+    return "http://rfam.xfam.org/family/alignment/download/format?alnType=seed&nseLabels=0&format=stockholm&acc=";
     // Janelia Farms url
     // "http://rfam.janelia.org/cgi-bin/getalignment?type=seed&fmt=stockholm&acc=";
   }