From: James Procter <j.procter@dundee.ac.uk>
Date: Mon, 4 Sep 2023 11:55:19 +0000 (+0100)
Subject: JAL-4250 fix location and height for RNA secondary structure stem arrows
X-Git-Tag: Release_2_11_3_0~3^2~11^2~2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=35fc4fb5b48e97eab1ee8758ae6f3fcc2322fd90;p=jalview.git

JAL-4250 fix location and height for RNA secondary structure stem arrows
---

diff --git a/src/jalview/renderer/AnnotationRenderer.java b/src/jalview/renderer/AnnotationRenderer.java
index 24fbb26..3f0c9fa 100644
--- a/src/jalview/renderer/AnnotationRenderer.java
+++ b/src/jalview/renderer/AnnotationRenderer.java
@@ -202,7 +202,7 @@ public class AnnotationRenderer
          */
         fillPolygon(g, new int[] { lastSSX + 5, lastSSX + 5, lastSSX },
                 new int[]
-                { y + iconOffset, y + 14 + iconOffset, y + 8 + iconOffset },
+                { y + iconOffset, y + 13 + iconOffset, y + 7 + iconOffset },
                 3);
         x1 += 5;
       }
@@ -222,7 +222,7 @@ public class AnnotationRenderer
          */
         fillPolygon(g, new int[] { x2 - 5, x2 - 5, x2 },
                 new int[]
-                { y + iconOffset, y + 14 + iconOffset, y + 8 + iconOffset },
+                { y + iconOffset, y + 13 + iconOffset, y + 7 + iconOffset },
                 3);
         x2 -= 5;
       }
@@ -232,7 +232,7 @@ public class AnnotationRenderer
       }
     }
     // draw arrow body
-    fillRect(g, x1, y + 4 + iconOffset, x2 - x1, 7);
+    fillRect(g, x1, y + 4 + iconOffset, x2 - x1, 6);
   }
 
   void drawNotCanonicalAnnot(Graphics g, Color nonCanColor,