From: Ben Soares <b.soares@dundee.ac.uk>
Date: Fri, 8 Sep 2023 14:37:23 +0000 (+0100)
Subject: JAL-4262 Make an excepetion for STDOUT filename in old style arguments detection
X-Git-Tag: Release_2_11_4_0~174^2~30^2
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=3613fa2821de21019a4b45ea3eec562a5a730c71;p=jalview.git

JAL-4262 Make an excepetion for STDOUT filename in old style arguments detection
---

diff --git a/src/jalview/bin/argparser/ArgParser.java b/src/jalview/bin/argparser/ArgParser.java
index b300c67..7581dde 100644
--- a/src/jalview/bin/argparser/ArgParser.java
+++ b/src/jalview/bin/argparser/ArgParser.java
@@ -250,7 +250,8 @@ public class ArgParser
           mixedExamples[1] = arg;
         }
       }
-      else if (arg.startsWith("-") || arg.equals("open"))
+      else if ((arg.startsWith("-") && !arg.equals(STDOUTFILENAME))
+              || arg.equals("open"))
       {
         d = true;
         if (mixedExamples[0] == null)