From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Tue, 5 Jul 2011 11:20:21 +0000 (+0100)
Subject: Revert "needed for linkedapplets_ng.html (JAL-859,JAL-469)"
X-Git-Tag: Release_2_7~152
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=37b210ecad3c132b87c525f84e3b754a4edf12a6;p=jalview.git

Revert "needed for linkedapplets_ng.html (JAL-859,JAL-469)"

This reverts commit 9740e237ec7a9accfd02aa6d21fd9be34847e214.
---

diff --git a/examples/plantfdx.annotations b/examples/plantfdx.annotations
deleted file mode 100644
index b4ed4a4..0000000
--- a/examples/plantfdx.annotations
+++ /dev/null
@@ -1,7 +0,0 @@
-JALVIEW_ANNOTATION
-# Created: Mon Dec 11 10:43:00 GMT 2006
-
-NO_GRAPH	Secondary Structure	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||1,E|E|E|||||2,E|E|E|E|E|E|E|E|||||3,H|H|H|H|H|||||||||||Fe|||||Fe|||Fe||4,E|E||||||5,E|E|||||||||||6,H|H|H|H||7,E||||Fe|||E|E||||9,E|E|E|E|E||||||||||
-NO_GRAPH	Iron Sulphur Contacts	||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||Fe|||||Fe|||Fe||||||||||||||||||||||||||||||Fe||||||||||||||||||||||
-COLOUR	Conservation	5d1500
-COLOUR	Quality	560c00
diff --git a/src/jalview/appletgui/AlignFrame.java b/src/jalview/appletgui/AlignFrame.java
index 80b01d0..8387089 100644
--- a/src/jalview/appletgui/AlignFrame.java
+++ b/src/jalview/appletgui/AlignFrame.java
@@ -144,8 +144,7 @@ public class AlignFrame extends EmbmenuFrame implements ActionListener,
     alignPanel.annotationSpaceFillerHolder.addKeyListener(this);
     alignPanel.alabels.addKeyListener(this);
     createAlignFrameWindow(embedded, title);
-
-    validate();
+    alignPanel.validate();
     alignPanel.adjustAnnotationHeight();
     alignPanel.paintAlignment(true);
   }