From: jprocter <Jim Procter>
Date: Thu, 27 Oct 2005 17:04:27 +0000 (+0000)
Subject: fixed exception thrown when msa web service is applied to alignment with sequence... 
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=39ef69a1e99aac47b3737f57605f68029ec4d897;p=jalview.git

fixed exception thrown when msa web service is applied to alignment with sequence features.
---

diff --git a/src/jalview/analysis/SeqsetUtils.java b/src/jalview/analysis/SeqsetUtils.java
index bd0f45c..11a31be 100755
--- a/src/jalview/analysis/SeqsetUtils.java
+++ b/src/jalview/analysis/SeqsetUtils.java
@@ -49,7 +49,7 @@ public class SeqsetUtils
     sqinfo.put("Name", seq.getName());
     sqinfo.put("Start", new Integer(seq.getStart()));
     sqinfo.put("End", new Integer(seq.getEnd()));
-    sqinfo.put("SeqFeatures", seq.getSequenceFeatures());
+    sqinfo.put("SeqFeatures", (seq.getSequenceFeatures() !=null) ? seq.getSequenceFeatures() : new Vector());
     sqinfo.put("PdbId",
                (seq.getPDBId() != null) ? seq.getPDBId() : new String(""));
 
@@ -93,7 +93,7 @@ public class SeqsetUtils
       sq.setEnd(end.intValue());
     }
 
-    if (sfeatures != null)
+    if ((sfeatures != null) && (sfeatures.size()>0))
     {
       sq.setSequenceFeatures(sfeatures);
     }