From: Sasha <asherstnev@main-laptop2>
Date: Fri, 19 Apr 2013 15:16:59 +0000 (+0100)
Subject: IntelliJ profile changes
X-Git-Url: http://source.jalview.org/gitweb/?a=commitdiff_plain;h=39f45d92bc9d7e3bfe89037ddd6fc5bed89796e0;p=jabaws.git

IntelliJ profile changes
---

diff --git a/.idea/workspace.xml b/.idea/workspace.xml
index c4b4cc6..9a2fafd 100644
--- a/.idea/workspace.xml
+++ b/.idea/workspace.xml
@@ -1,21 +1,30 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <project version="4">
+  <component name="AnalysisUIOptions">
+    <option name="CUSTOM_SCOPE_NAME" value="Hierarchy of compbio.data.sequence.Alignment" />
+    <option name="ANALYSIS_IN_BACKGROUND" value="true" />
+  </component>
   <component name="ChangeListManager">
     <list default="true" id="e8b4b79e-8aed-4386-9e7f-8dda0becf4dd" name="Default" comment="">
-      <change type="NEW" beforePath="" afterPath="$PROJECT_DIR$/.idea/ant.xml" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/website/archive/full-jaba-client-2.0.jar" afterPath="$PROJECT_DIR$/website/archive/full-jaba-client-2.0.jar" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/website/archive/jaba-no-binaries.war" afterPath="$PROJECT_DIR$/website/archive/jaba-no-binaries.war" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/website/archive/jaba.war" afterPath="$PROJECT_DIR$/website/archive/jaba.war" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/ExecutionStatistic/log/log.ctrl" afterPath="$PROJECT_DIR$/ExecutionStatistic/log/log.ctrl" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/ExecutionStatistic/log/log10.dat" afterPath="$PROJECT_DIR$/ExecutionStatistic/log/log10.dat" />
-      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/ExecutionStatistic/log/logmirror.ctrl" afterPath="$PROJECT_DIR$/ExecutionStatistic/log/logmirror.ctrl" />
+      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/website/archive/datamodel-2.0.jar" afterPath="$PROJECT_DIR$/website/archive/datamodel-2.0.jar" />
+      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/website/archive/min-jaba-client-2.0.jar" afterPath="$PROJECT_DIR$/website/archive/min-jaba-client-2.0.jar" />
+      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/webservices/compbio/ws/client/CmdHelper.java" afterPath="$PROJECT_DIR$/webservices/compbio/ws/client/CmdHelper.java" />
+      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/webservices/compbio/ws/client/Constraints.java" afterPath="$PROJECT_DIR$/webservices/compbio/ws/client/Constraints.java" />
+      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/webservices/compbio/ws/server/GenericMetadataService.java" afterPath="$PROJECT_DIR$/webservices/compbio/ws/server/GenericMetadataService.java" />
+      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/webservices/compbio/ws/client/IOHelper.java" afterPath="$PROJECT_DIR$/webservices/compbio/ws/client/IOHelper.java" />
+      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/webservices/compbio/data/msa/MsaWS.java" afterPath="$PROJECT_DIR$/webservices/compbio/data/msa/MsaWS.java" />
+      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/how_to_add_new_webservice.txt" afterPath="$PROJECT_DIR$/how_to_add_new_webservice.txt" />
+      <change type="MODIFICATION" beforePath="$PROJECT_DIR$/.idea/workspace.xml" afterPath="$PROJECT_DIR$/.idea/workspace.xml" />
     </list>
     <ignored path="jabaws-dev.iws" />
     <ignored path=".idea/workspace.xml" />
-    <file path="/Dummy.txt" changelist="e8b4b79e-8aed-4386-9e7f-8dda0becf4dd" time="1364571839570" ignored="false" />
+    <file path="/Dummy.txt" changelist="e8b4b79e-8aed-4386-9e7f-8dda0becf4dd" time="1366363375133" ignored="false" />
     <file path="$PROJECT_DIR$/web/WEB-INF/web.xml" changelist="e8b4b79e-8aed-4386-9e7f-8dda0becf4dd" time="1364569053673" ignored="false" />
     <file path="$PROJECT_DIR$/../../jaba-git2/jabaws-dev/webservices/compbio/ws/server/JronnWS.java" changelist="e8b4b79e-8aed-4386-9e7f-8dda0becf4dd" time="1364571910193" ignored="false" />
     <file path="$PROJECT_DIR$/../../jaba-git2/jabaws-dev/testsrc/compbio/runner/msa/ClustalOTester.java" changelist="e8b4b79e-8aed-4386-9e7f-8dda0becf4dd" time="1364569115977" ignored="false" />
+    <file path="/CmdHelper.java" changelist="e8b4b79e-8aed-4386-9e7f-8dda0becf4dd" time="1364576877598" ignored="false" />
+    <file path="/IOHelper.java" changelist="e8b4b79e-8aed-4386-9e7f-8dda0becf4dd" time="1364577189175" ignored="false" />
+    <file path="/WSUtil.java" changelist="e8b4b79e-8aed-4386-9e7f-8dda0becf4dd" time="1364651934576" ignored="false" />
     <option name="TRACKING_ENABLED" value="true" />
     <option name="SHOW_DIALOG" value="false" />
     <option name="HIGHLIGHT_CONFLICTS" value="true" />
@@ -23,14 +32,23 @@
     <option name="LAST_RESOLUTION" value="IGNORE" />
   </component>
   <component name="ChangesViewManager" flattened_view="true" show_ignored="false" />
+  <component name="Commander">
+    <leftPanel />
+    <rightPanel />
+    <splitter proportion="0.5" />
+  </component>
   <component name="CreatePatchCommitExecutor">
     <option name="PATCH_PATH" value="" />
   </component>
   <component name="DaemonCodeAnalyzer">
     <disable_hints />
   </component>
+  <component name="DatabaseView">
+    <flatten value="false" />
+    <groupTables value="false" />
+    <sortChildren value="false" />
+  </component>
   <component name="DebuggerManager">
-    <ui_properties default_suspend_policy="SuspendAll" default_condition_enabled="true" />
     <breakpoint_any default_suspend_policy="SuspendAll" default_condition_enabled="true">
       <breakpoint>
         <option name="NOTIFY_CAUGHT" value="true" />
@@ -65,6 +83,7 @@
         <option name="LOG_MESSAGE" value="" />
       </breakpoint>
     </breakpoint_any>
+    <ui_properties default_suspend_policy="SuspendAll" default_condition_enabled="true" />
     <breakpoint_rules />
     <ui_properties />
   </component>
@@ -74,65 +93,13 @@
   </component>
   <component name="FileEditorManager">
     <leaf>
-      <file leaf-file-name="LimitsManager.java" pinned="false" current="false" current-in-tab="false">
-        <entry file="file://$PROJECT_DIR$/datamodel/compbio/metadata/LimitsManager.java">
-          <provider selected="true" editor-type-id="text-editor">
-            <state line="27" column="19" selection-start="1057" selection-end="1057" vertical-scroll-proportion="0.0">
-              <folding />
-            </state>
-          </provider>
-        </entry>
-      </file>
-      <file leaf-file-name="Configurator.java" pinned="false" current="false" current-in-tab="false">
-        <entry file="file://$PROJECT_DIR$/engine/compbio/engine/Configurator.java">
-          <provider selected="true" editor-type-id="text-editor">
-            <state line="50" column="59" selection-start="1937" selection-end="1937" vertical-scroll-proportion="0.0">
-              <folding />
-            </state>
-          </provider>
-        </entry>
-      </file>
-      <file leaf-file-name="RegistryWS.java" pinned="false" current="false" current-in-tab="false">
-        <entry file="file://$PROJECT_DIR$/webservices/compbio/ws/server/RegistryWS.java">
-          <provider selected="true" editor-type-id="text-editor">
-            <state line="29" column="25" selection-start="1110" selection-end="1110" vertical-scroll-proportion="0.0">
-              <folding />
-            </state>
-          </provider>
-        </entry>
-      </file>
-      <file leaf-file-name="AnnualStat.java" pinned="false" current="false" current-in-tab="false">
-        <entry file="file://$PROJECT_DIR$/webservices/compbio/stat/servlet/AnnualStat.java">
-          <provider selected="true" editor-type-id="text-editor">
-            <state line="38" column="27" selection-start="1385" selection-end="1385" vertical-scroll-proportion="0.0">
-              <folding />
-            </state>
-          </provider>
-        </entry>
-      </file>
-      <file leaf-file-name="MafftTester.java" pinned="false" current="false" current-in-tab="false">
-        <entry file="file://$PROJECT_DIR$/testsrc/compbio/runner/msa/MafftTester.java">
-          <provider selected="true" editor-type-id="text-editor">
-            <state line="20" column="22" selection-start="851" selection-end="851" vertical-scroll-proportion="0.0">
-              <folding />
-            </state>
-          </provider>
-        </entry>
-      </file>
-      <file leaf-file-name="JronnWS.java" pinned="false" current="true" current-in-tab="true">
-        <entry file="file://$PROJECT_DIR$/webservices/compbio/ws/server/JronnWS.java">
+      <file leaf-file-name="CmdHelper.java" pinned="false" current="true" current-in-tab="true">
+        <entry file="file://$PROJECT_DIR$/webservices/compbio/ws/client/CmdHelper.java">
           <provider selected="true" editor-type-id="text-editor">
-            <state line="34" column="48" selection-start="1369" selection-end="1369" vertical-scroll-proportion="0.21212122">
-              <folding />
-            </state>
-          </provider>
-        </entry>
-      </file>
-      <file leaf-file-name="Alignment.java" pinned="false" current="false" current-in-tab="false">
-        <entry file="file://$PROJECT_DIR$/datamodel/compbio/data/sequence/Alignment.java">
-          <provider selected="true" editor-type-id="text-editor">
-            <state line="43" column="7" selection-start="1409" selection-end="1409" vertical-scroll-proportion="0.0">
-              <folding />
+            <state line="149" column="5" selection-start="4013" selection-end="4013" vertical-scroll-proportion="0.8697271">
+              <folding>
+                <element signature="e#0#4016#0" expanded="true" />
+              </folding>
             </state>
           </provider>
         </entry>
@@ -148,14 +115,45 @@
     <option name="RECENT_GIT_ROOT_PATH" value="$PROJECT_DIR$" />
   </component>
   <component name="GitLogSettings">
+    <option name="myStructureFilterPaths" />
     <option name="myDateState">
       <MyDateState />
     </option>
   </component>
+  <component name="IdeDocumentHistory">
+    <option name="changedFiles">
+      <list>
+        <option value="$PROJECT_DIR$/webservices/compbio/ws/server/GenericMetadataService.java" />
+        <option value="$PROJECT_DIR$/webservices/compbio/ws/client/Constraints.java" />
+        <option value="$PROJECT_DIR$/webservices/compbio/ws/client/IOHelper.java" />
+        <option value="$PROJECT_DIR$/webservices/compbio/ws/client/Jws2Client.java" />
+        <option value="$PROJECT_DIR$/webservices/compbio/data/msa/MsaWS.java" />
+        <option value="$PROJECT_DIR$/webservices/compbio/ws/server/WSUtil.java" />
+        <option value="$PROJECT_DIR$/webservices/compbio/ws/client/CmdHelper.java" />
+      </list>
+    </option>
+  </component>
   <component name="ProjectFrameBounds">
-    <option name="x" value="1946" />
-    <option name="width" value="1920" />
-    <option name="height" value="1152" />
+    <option name="x" value="24" />
+    <option name="y" value="24" />
+    <option name="width" value="1896" />
+    <option name="height" value="1153" />
+  </component>
+  <component name="ProjectInspectionProfilesVisibleTreeState">
+    <entry key="Project Default">
+      <profile-state>
+        <expanded-state>
+          <State>
+            <id />
+          </State>
+        </expanded-state>
+        <selected-state>
+          <State>
+            <id>Abstraction issues</id>
+          </State>
+        </selected-state>
+      </profile-state>
+    </entry>
   </component>
   <component name="ProjectLevelVcsManager" settingsEditedManually="false">
     <OptionsSetting value="true" id="Add" />
@@ -186,7 +184,6 @@
     </navigator>
     <panes>
       <pane id="PackagesPane" />
-      <pane id="Scope" />
       <pane id="ProjectPane">
         <subPane>
           <PATH>
@@ -230,10 +227,6 @@
               <option name="myItemId" value="ws" />
               <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
             </PATH_ELEMENT>
-            <PATH_ELEMENT>
-              <option name="myItemId" value="server" />
-              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
-            </PATH_ELEMENT>
           </PATH>
           <PATH>
             <PATH_ELEMENT>
@@ -256,6 +249,10 @@
               <option name="myItemId" value="ws" />
               <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
             </PATH_ELEMENT>
+            <PATH_ELEMENT>
+              <option name="myItemId" value="client" />
+              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
+            </PATH_ELEMENT>
           </PATH>
           <PATH>
             <PATH_ELEMENT>
@@ -274,6 +271,10 @@
               <option name="myItemId" value="compbio" />
               <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
             </PATH_ELEMENT>
+            <PATH_ELEMENT>
+              <option name="myItemId" value="stat" />
+              <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
+            </PATH_ELEMENT>
           </PATH>
           <PATH>
             <PATH_ELEMENT>
@@ -285,32 +286,33 @@
               <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
             </PATH_ELEMENT>
             <PATH_ELEMENT>
-              <option name="myItemId" value="engine" />
+              <option name="myItemId" value="webservices" />
               <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
             </PATH_ELEMENT>
             <PATH_ELEMENT>
-              <option name="myItemId" value="engine" />
+              <option name="myItemId" value="compbio" />
               <option name="myItemType" value="com.intellij.ide.projectView.impl.nodes.PsiDirectoryNode" />
             </PATH_ELEMENT>
           </PATH>
         </subPane>
       </pane>
+      <pane id="Scope" />
     </panes>
   </component>
   <component name="PropertiesComponent">
     <property name="project.structure.last.edited" value="Modules" />
     <property name="FileHistory.git4idea.history.GitHistoryProvider_flatWidth0" value="214" />
-    <property name="FileHistory.git4idea.history.GitHistoryProvider_flatWidth1" value="233" />
     <property name="project.structure.proportion" value="0.15" />
+    <property name="FileHistory.git4idea.history.GitHistoryProvider_flatWidth1" value="233" />
     <property name="options.splitter.main.proportions" value="0.3" />
-    <property name="FileHistory.git4idea.history.GitHistoryProvider_treeWidth0" value="214" />
-    <property name="FileHistory.git4idea.history.GitHistoryProvider_flatOrder1" value="1" />
     <property name="MemberChooser.sorted" value="false" />
+    <property name="FileHistory.git4idea.history.GitHistoryProvider_flatOrder1" value="1" />
+    <property name="FileHistory.git4idea.history.GitHistoryProvider_treeWidth0" value="214" />
     <property name="FileHistory.git4idea.history.GitHistoryProvider_flatOrder0" value="0" />
-    <property name="last_opened_file_path" value="$PROJECT_DIR$/../../jaba-git2/jabaws-dev" />
+    <property name="last_opened_file_path" value="$PROJECT_DIR$/../../jaba-git2" />
     <property name="FileHistory.git4idea.history.GitHistoryProvider_flatWidth2" value="240" />
-    <property name="FileHistory.git4idea.history.GitHistoryProvider_flatWidth3" value="1138" />
     <property name="FileHistory.git4idea.history.GitHistoryProvider_treeWidth3" value="1138" />
+    <property name="FileHistory.git4idea.history.GitHistoryProvider_flatWidth3" value="1138" />
     <property name="FileHistory.git4idea.history.GitHistoryProvider_treeWidth2" value="240" />
     <property name="FileHistory.git4idea.history.GitHistoryProvider_treeWidth1" value="233" />
     <property name="GoToClass.toSaveIncludeLibraries" value="false" />
@@ -345,19 +347,6 @@
       <option name="PORT" value="5005" />
       <method />
     </configuration>
-    <configuration default="true" type="Applet" factoryName="Applet">
-      <module name="" />
-      <option name="MAIN_CLASS_NAME" />
-      <option name="HTML_FILE_NAME" />
-      <option name="HTML_USED" value="false" />
-      <option name="WIDTH" value="400" />
-      <option name="HEIGHT" value="300" />
-      <option name="POLICY_FILE" value="$APPLICATION_HOME_DIR$/bin/appletviewer.policy" />
-      <option name="VM_PARAMETERS" />
-      <option name="ALTERNATIVE_JRE_PATH_ENABLED" value="false" />
-      <option name="ALTERNATIVE_JRE_PATH" />
-      <method />
-    </configuration>
     <configuration default="true" type="TestNG" factoryName="TestNG">
       <extension name="coverage" enabled="false" merge="false" sample_coverage="true" runner="idea" />
       <module name="" />
@@ -386,6 +375,19 @@
       <listeners />
       <method />
     </configuration>
+    <configuration default="true" type="Applet" factoryName="Applet">
+      <module name="" />
+      <option name="MAIN_CLASS_NAME" />
+      <option name="HTML_FILE_NAME" />
+      <option name="HTML_USED" value="false" />
+      <option name="WIDTH" value="400" />
+      <option name="HEIGHT" value="300" />
+      <option name="POLICY_FILE" value="$APPLICATION_HOME_DIR$/bin/appletviewer.policy" />
+      <option name="VM_PARAMETERS" />
+      <option name="ALTERNATIVE_JRE_PATH_ENABLED" value="false" />
+      <option name="ALTERNATIVE_JRE_PATH" />
+      <method />
+    </configuration>
     <configuration default="true" type="Application" factoryName="Application">
       <extension name="coverage" enabled="false" merge="false" sample_coverage="true" runner="idea" />
       <option name="MAIN_CLASS_NAME" />
@@ -429,6 +431,11 @@
     </configuration>
   </component>
   <component name="ShelveChangesManager" show_recycled="false" />
+  <component name="SliceManager">
+    <option name="analysisUIOptions">
+      <AnalysisUIOptions />
+    </option>
+  </component>
   <component name="SvnConfiguration" maxAnnotateRevisions="500" myUseAcceleration="nothing" myAutoUpdateAfterCommit="false" cleanupOnStartRun="false">
     <option name="USER" value="" />
     <option name="PASSWORD" value="" />
@@ -476,34 +483,35 @@
     </todo-panel>
   </component>
   <component name="ToolWindowManager">
-    <frame x="1946" y="0" width="1920" height="1152" extended-state="0" />
-    <editor active="false" />
+    <frame x="24" y="24" width="1896" height="1153" extended-state="0" />
+    <editor active="true" />
     <layout>
-      <window_info id="Changes" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.3296593" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
+      <window_info id="Changes" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32685512" sideWeight="0.4939117" order="7" side_tool="false" content_ui="tabs" />
       <window_info id="JetGradle" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="3" side_tool="false" content_ui="tabs" />
       <window_info id="Palette" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="3" side_tool="false" content_ui="tabs" />
-      <window_info id="Database" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="3" side_tool="false" content_ui="tabs" />
-      <window_info id="Ant Build" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.24946466" sideWeight="0.6713427" order="1" side_tool="false" content_ui="tabs" />
+      <window_info id="Database" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32994652" sideWeight="0.6556557" order="3" side_tool="false" content_ui="tabs" />
+      <window_info id="Ant Build" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.24919786" sideWeight="0.6556557" order="1" side_tool="false" content_ui="tabs" />
       <window_info id="Debug" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.4" sideWeight="0.5" order="3" side_tool="false" content_ui="tabs" />
       <window_info id="IDEtalk Messages" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
-      <window_info id="Event Log" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="7" side_tool="true" content_ui="tabs" />
-      <window_info id="Favorites" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="2" side_tool="true" content_ui="tabs" />
-      <window_info id="IDEtalk" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="3" side_tool="false" content_ui="tabs" />
-      <window_info id="Version Control" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.3296593" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
-      <window_info id="Messages" active="true" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="true" weight="0.47394788" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
+      <window_info id="Event Log" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="true" weight="0.16316317" sideWeight="0.18569255" order="7" side_tool="true" content_ui="tabs" />
+      <window_info id="Favorites" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.24544074" sideWeight="0.19223987" order="2" side_tool="true" content_ui="tabs" />
+      <window_info id="IDEtalk" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32978722" sideWeight="0.7918871" order="3" side_tool="false" content_ui="tabs" />
+      <window_info id="Version Control" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.32804233" sideWeight="0.4969605" order="7" side_tool="false" content_ui="tabs" />
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